Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WHO22_RS19190 Genome accession   NZ_CP148122
Coordinates   3644121..3644810 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3639121..3649810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS19155 flgN 3639301..3639783 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHO22_RS19160 flgM 3639799..3640065 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHO22_RS19165 yvyF 3640146..3640565 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHO22_RS19170 comFC 3640639..3641361 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHO22_RS19175 comFB 3641325..3641621 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHO22_RS19180 comFA 3641681..3643072 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHO22_RS19185 fakBA 3643178..3644023 (-) 846 WP_003244125.1 DegV family protein -
  WHO22_RS19190 degU 3644121..3644810 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHO22_RS19195 degS 3644893..3646050 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WHO22_RS19200 yvyE 3646267..3646920 (+) 654 WP_003227979.1 YigZ family protein -
  WHO22_RS19205 tagV 3646920..3648095 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  WHO22_RS19210 tagO 3648168..3649244 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=951259 WHO22_RS19190 WP_003219701.1 3644121..3644810(-) (degU) [Bacillus subtilis isolate FELIX_MS513]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=951259 WHO22_RS19190 WP_003219701.1 3644121..3644810(-) (degU) [Bacillus subtilis isolate FELIX_MS513]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1