Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHO22_RS19170 Genome accession   NZ_CP148122
Coordinates   3640639..3641361 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635639..3646361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS19135 fliW 3635778..3636209 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WHO22_RS19140 yviE 3636230..3636805 (-) 576 WP_003243053.1 DUF6470 family protein -
  WHO22_RS19145 flgL 3636852..3637748 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  WHO22_RS19150 flgK 3637759..3639282 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WHO22_RS19155 flgN 3639301..3639783 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHO22_RS19160 flgM 3639799..3640065 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHO22_RS19165 yvyF 3640146..3640565 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHO22_RS19170 comFC 3640639..3641361 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHO22_RS19175 comFB 3641325..3641621 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHO22_RS19180 comFA 3641681..3643072 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHO22_RS19185 fakBA 3643178..3644023 (-) 846 WP_003244125.1 DegV family protein -
  WHO22_RS19190 degU 3644121..3644810 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHO22_RS19195 degS 3644893..3646050 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=951257 WHO22_RS19170 WP_003227991.1 3640639..3641361(-) (comFC) [Bacillus subtilis isolate FELIX_MS513]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=951257 WHO22_RS19170 WP_003227991.1 3640639..3641361(-) (comFC) [Bacillus subtilis isolate FELIX_MS513]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1