Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WHO32_RS13370 Genome accession   NZ_CP148112
Coordinates   2552240..2552575 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547240..2557575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS13350 gcvT 2547832..2548920 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  WHO32_RS13355 yqhH 2549362..2551035 (+) 1674 WP_004398544.1 SNF2-related protein -
  WHO32_RS13360 yqhG 2551056..2551850 (+) 795 WP_003230200.1 YqhG family protein -
  WHO32_RS13365 sinI 2552033..2552206 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  WHO32_RS13370 sinR 2552240..2552575 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  WHO32_RS13375 tasA 2552668..2553453 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHO32_RS13380 sipW 2553517..2554089 (-) 573 WP_003246088.1 signal peptidase I -
  WHO32_RS13385 tapA 2554073..2554834 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHO32_RS13390 yqzG 2555106..2555432 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHO32_RS13395 spoIIT 2555474..2555653 (-) 180 WP_003230176.1 YqzE family protein -
  WHO32_RS13400 comGG 2555724..2556098 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHO32_RS13405 comGF 2556099..2556482 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHO32_RS13410 comGE 2556508..2556855 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHO32_RS13415 comGD 2556839..2557270 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHO32_RS13420 comGC 2557260..2557556 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=950841 WHO32_RS13370 WP_003226345.1 2552240..2552575(+) (sinR) [Bacillus subtilis isolate FELIX_MS504]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=950841 WHO32_RS13370 WP_003226345.1 2552240..2552575(+) (sinR) [Bacillus subtilis isolate FELIX_MS504]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1