Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AABA08_RS00845 Genome accession   NZ_AP028602
Coordinates   159017..159610 (+) Length   197 a.a.
NCBI ID   WP_000271486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 154017..164610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS00825 (TKY092604_01520) ribE 155199..155666 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  AABA08_RS00830 (TKY092604_01530) - 155667..156872 (-) 1206 WP_016399605.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  AABA08_RS00835 (TKY092604_01540) ribE 156892..157527 (-) 636 WP_016398423.1 riboflavin synthase -
  AABA08_RS00840 (TKY092604_01550) ribD 157512..158612 (-) 1101 WP_001284109.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AABA08_RS00845 (TKY092604_01560) ruvA 159017..159610 (+) 594 WP_000271486.1 Holliday junction branch migration protein RuvA Machinery gene
  AABA08_RS00850 (TKY092604_01570) - 159620..160183 (+) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  AABA08_RS00855 (TKY092604_01580) - 160180..160857 (+) 678 WP_000987422.1 CPBP family intramembrane glutamic endopeptidase -
  AABA08_RS00860 (TKY092604_01590) - 160994..162025 (-) 1032 WP_000255096.1 S66 family peptidase -
  AABA08_RS00865 (TKY092604_01600) - 162280..162963 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  AABA08_RS00870 (TKY092604_01610) - 162975..163919 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21620.12 Da        Isoelectric Point: 6.7338

>NTDB_id=95081 AABA08_RS00845 WP_000271486.1 159017..159610(+) (ruvA) [Streptococcus pneumoniae strain PF2]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=95081 AABA08_RS00845 WP_000271486.1 159017..159610(+) (ruvA) [Streptococcus pneumoniae strain PF2]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGATCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421

Multiple sequence alignment