Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   AAA982_RS09870 Genome accession   NZ_AP028601
Coordinates   1895324..1895818 (-) Length   164 a.a.
NCBI ID   WP_232034853.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890324..1900818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS09840 (TKY113292_19000) - 1890633..1891508 (+) 876 WP_000669493.1 substrate-binding domain-containing protein -
  AAA982_RS09845 (TKY113292_19010) pstC 1891626..1892489 (+) 864 WP_000165893.1 phosphate ABC transporter permease subunit PstC -
  AAA982_RS09850 (TKY113292_19020) pstA 1892482..1893297 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  AAA982_RS09855 (TKY113292_19030) pstB 1893299..1894051 (+) 753 WP_000536449.1 phosphate ABC transporter ATP-binding protein PstB -
  AAA982_RS09860 (TKY113292_19040) phoU 1894066..1894716 (+) 651 WP_001245781.1 phosphate signaling complex protein PhoU -
  AAA982_RS09865 (TKY113292_19050) - 1894778..1895209 (+) 432 Protein_1902 transposase -
  AAA982_RS09870 (TKY113292_19060) comR 1895324..1895818 (-) 495 WP_232034853.1 helix-turn-helix transcriptional regulator Regulator
  AAA982_RS09875 (TKY113292_19070) - 1895976..1896992 (+) 1017 WP_338168281.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AAA982_RS09880 (TKY113292_19080) galU 1897014..1897913 (+) 900 WP_000202228.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAA982_RS09885 (TKY113292_19090) - 1897980..1898657 (-) 678 WP_000658494.1 rhomboid family intramembrane serine protease -
  AAA982_RS09890 (TKY113292_19100) - 1898641..1899180 (-) 540 WP_338168282.1 5-formyltetrahydrofolate cyclo-ligase -
  AAA982_RS09895 (TKY113292_19110) - 1899192..1900322 (-) 1131 WP_000885068.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19652.72 Da        Isoelectric Point: 5.1881

>NTDB_id=95057 AAA982_RS09870 WP_232034853.1 1895324..1895818(-) (comR) [Streptococcus pneumoniae strain PF1]
MIQYMLIIEVNNSGSSCRLREFGEKIKRLRLAKKISRSEFCGDESELSIRQLIRIENGESRPTLTKLKYIAERLGVEDYK
LMPSYIELDKEYLELKYFLMRTPTYEDETIAQKKESVFAKIFEEYYDRLPEEERFIIPNYSYLALTNYTVQKLPEKLVEI
LSFW

Nucleotide


Download         Length: 495 bp        

>NTDB_id=95057 AAA982_RS09870 WP_232034853.1 1895324..1895818(-) (comR) [Streptococcus pneumoniae strain PF1]
TTGATTCAGTATATGCTTATAATAGAGGTAAACAACTCAGGAAGTTCTTGTAGGTTGCGAGAGTTTGGCGAAAAAATTAA
AAGATTACGTTTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTA
GAATTGAAAATGGAGAATCCAGACCAACACTAACAAAGTTAAAATATATCGCTGAACGTTTGGGGGTTGAGGATTACAAG
TTGATGCCAAGTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGA
TGAAACTATCGCCCAAAAGAAAGAGAGTGTTTTTGCTAAGATTTTTGAAGAGTATTATGATAGGTTACCTGAGGAAGAAA
GATTTATCATCCCAAATTATTCATATCTGGCACTAACGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATA
CTGTCCTTCTGGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(90-137)

Helix-turn-helix (HTH_3)

(26-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

55

73.171

0.402
  comR Streptococcus pyogenes MGAS315

53.333

73.171

0.39
  comR Streptococcus mutans UA159

53.333

73.171

0.39

Multiple sequence alignment