Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   WHL51_RS18750 Genome accession   NZ_CP148102
Coordinates   3662379..3662498 (+) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus spizizenii str. W23     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3657379..3667498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS18725 - 3657550..3658833 (+) 1284 WP_003222013.1 pitrilysin family protein -
  WHL51_RS18730 albG 3658830..3659531 (+) 702 WP_003222015.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  WHL51_RS18735 - 3659537..3659656 (-) 120 Protein_3644 hypothetical protein -
  WHL51_RS18740 - 3659668..3661023 (-) 1356 WP_003222017.1 YncE family protein -
  WHL51_RS18745 rapF 3661250..3662395 (+) 1146 WP_003222022.1 response regulator aspartate phosphatase RapF Regulator
  WHL51_RS18750 phrF 3662379..3662498 (+) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  WHL51_RS18755 speB 3662651..3663523 (-) 873 WP_003222025.1 agmatinase -
  WHL51_RS18760 speE 3663584..3664414 (-) 831 WP_003222027.1 spermidine synthase -
  WHL51_RS18765 - 3664616..3666691 (+) 2076 WP_003222029.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=950466 WHL51_RS18750 WP_003222023.1 3662379..3662498(+) (phrF) [Bacillus spizizenii str. W23]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=950466 WHL51_RS18750 WP_003222023.1 3662379..3662498(+) (phrF) [Bacillus spizizenii str. W23]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACAAATATTGCAAATGCACC
TACCCACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487