Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WHL51_RS15670 Genome accession   NZ_CP148102
Coordinates   3042639..3043283 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037639..3048283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS15635 - 3038834..3039265 (+) 432 WP_003220732.1 Na(+)/H(+) antiporter subunit B -
  WHL51_RS15640 - 3039265..3039606 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WHL51_RS15645 - 3039599..3041080 (+) 1482 WP_003220728.1 Na+/H+ antiporter subunit D -
  WHL51_RS15650 - 3041086..3041562 (+) 477 WP_003220727.1 Na+/H+ antiporter subunit E -
  WHL51_RS15655 - 3041562..3041846 (+) 285 WP_003220724.1 Na(+)/H(+) antiporter subunit F1 -
  WHL51_RS15660 mnhG 3041830..3042204 (+) 375 WP_003220721.1 monovalent cation/H(+) antiporter subunit G -
  WHL51_RS15665 - 3042243..3042623 (-) 381 WP_003220719.1 hotdog fold thioesterase -
  WHL51_RS15670 comA 3042639..3043283 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WHL51_RS15675 comP 3043364..3045688 (-) 2325 WP_003220714.1 histidine kinase Regulator
  WHL51_RS15680 comX 3045696..3045860 (-) 165 WP_003220712.1 competence pheromone ComX -
  WHL51_RS15685 - 3045873..3046733 (-) 861 WP_003220710.1 polyprenyl synthetase family protein -
  WHL51_RS15690 degQ 3046919..3047059 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WHL51_RS15695 - 3047291..3047407 (+) 117 WP_136975871.1 hypothetical protein -
  WHL51_RS15700 - 3047522..3047890 (+) 369 WP_003220698.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=950453 WHL51_RS15670 WP_003220716.1 3042639..3043283(-) (comA) [Bacillus spizizenii str. W23]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=950453 WHL51_RS15670 WP_003220716.1 3042639..3043283(-) (comA) [Bacillus spizizenii str. W23]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAACCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATATTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGACTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGACGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGTTTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCAATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGATGGTGTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1