Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHL51_RS02105 Genome accession   NZ_CP148102
Coordinates   418709..419659 (+) Length   316 a.a.
NCBI ID   WP_003225000.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413709..424659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL51_RS02080 yclK 413768..415189 (+) 1422 WP_079996289.1 two-component system sensor histidine kinase YclK -
  WHL51_RS02085 rapC 415351..416499 (+) 1149 WP_003224987.1 response regulator aspartate phosphatase RapC Regulator
  WHL51_RS02090 phrC 416483..416605 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  WHL51_RS02095 - 416704..416811 (-) 108 WP_003224996.1 YjcZ family sporulation protein -
  WHL51_RS02100 - 416960..418324 (-) 1365 WP_003224998.1 aspartate kinase -
  WHL51_RS02105 ceuB 418709..419659 (+) 951 WP_003225000.1 petrobactin ABC transporter permease YclN Machinery gene
  WHL51_RS02110 yclO 419652..420599 (+) 948 WP_003225003.1 petrobactin ABC transporter permease YclO -
  WHL51_RS02115 yclP 420593..421351 (+) 759 WP_003225005.1 petrobactin ABC transporter ATP-binding protein YclP -
  WHL51_RS02120 yclQ 421373..422329 (+) 957 WP_003225007.1 petrobactin ABC transporter substrate-binding protein YclQ -
  WHL51_RS02125 - 422376..423800 (-) 1425 WP_003225009.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34936.32 Da        Isoelectric Point: 9.9364

>NTDB_id=950402 WHL51_RS02105 WP_003225000.1 418709..419659(+) (ceuB) [Bacillus spizizenii str. W23]
MKLRYLFILLIILGVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLFSIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=950402 WHL51_RS02105 WP_003225000.1 418709..419659(+) (ceuB) [Bacillus spizizenii str. W23]
ATGAAGTTACGTTACTTATTTATTCTACTTATCATATTAGGAGTCACGTCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACACTGTTTGCAAGCCGTTTGCCGCGATTGTTCAGCATTGTCA
TCGCGGGATTAAGTATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAACAAATTTGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCTCGGCTCGGTATTTTAATTTCCTTGCTGCTGTTCACATCCGCGAGTCCTTTAATGAAAATGCT
GGTCGCGTTTGTCTTTGCTCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTCCAAGGAGACTTCTCTTTAGTCGTAAAAGGAAGATACGAGCTACTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TGAAGTACAAGCGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTTCCATTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAACAGTTTGCCGCACAC
GGCGCTATTGGGAGCGGTTTTTGTGCTCTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTACGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525