Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACHWYH_RS05810 Genome accession   NZ_CP172084
Coordinates   1171004..1171618 (-) Length   204 a.a.
NCBI ID   WP_032823908.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1166004..1176618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS05785 proC 1166572..1167387 (+) 816 WP_032823904.1 pyrroline-5-carboxylate reductase -
  ACHWYH_RS05790 - 1167387..1168553 (+) 1167 WP_032823906.1 3-phenylpropionate MFS transporter -
  ACHWYH_RS05795 xerD 1168584..1169477 (+) 894 WP_005668988.1 site-specific tyrosine recombinase XerD -
  ACHWYH_RS05800 - 1169650..1169937 (+) 288 WP_005656308.1 DUF5339 domain-containing protein -
  ACHWYH_RS05805 ruvB 1169989..1170996 (-) 1008 WP_032823907.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACHWYH_RS05810 ruvA 1171004..1171618 (-) 615 WP_032823908.1 Holliday junction branch migration protein RuvA Machinery gene
  ACHWYH_RS05815 ruvC 1171681..1172253 (-) 573 WP_005662962.1 crossover junction endodeoxyribonuclease RuvC -
  ACHWYH_RS05820 - 1172300..1173040 (-) 741 WP_032823909.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACHWYH_RS05825 nudB 1173200..1173676 (-) 477 WP_162697435.1 dihydroneopterin triphosphate diphosphatase -
  ACHWYH_RS05830 aspS 1173698..1175464 (-) 1767 WP_032823911.1 aspartate--tRNA ligase -
  ACHWYH_RS05835 - 1175683..1176201 (+) 519 WP_032823912.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22569.32 Da        Isoelectric Point: 7.3192

>NTDB_id=949916 ACHWYH_RS05810 WP_032823908.1 1171004..1171618(-) (ruvA) [Haemophilus influenzae strain GA81666]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPGIGQETTLFTHFVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIRSVPSIEPSVENS
SDEAISALIALGYKPSEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=949916 ACHWYH_RS05810 WP_032823908.1 1171004..1171618(-) (ruvA) [Haemophilus influenzae strain GA81666]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTTAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGGAATTGGTCAAGAAACGACTTTATTCACCCATTTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTAGGGCCTAAATTAGCCTTAGCGATTTTATCTGCCATGTCGGTCGAACAATTTGCCTATGCGATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATCCCAGGGGTTGGCAAAAAAACTGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTCAAAG
GCGTAAAACAAAGTGATTTCTTTGTAGAAAGTACCCATATTCGGTCAGTTCCATCTATTGAACCGAGTGTAGAAAATTCA
TCTGATGAAGCTATTTCAGCCTTGATTGCTTTAGGTTATAAACCTTCAGAAGCAGAAAAAATGGTGAAACGAGTTGCTAA
GCCAGAATTAACCAGTGAACAAGTTATCCGCGAAGCGTTAAAAGCCGCACTGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.453

99.51

0.363
  ruvA Streptococcus pneumoniae R6

36.453

99.51

0.363
  ruvA Streptococcus pneumoniae D39

36.453

99.51

0.363