Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ACHWYH_RS05805 Genome accession   NZ_CP172084
Coordinates   1169989..1170996 (-) Length   335 a.a.
NCBI ID   WP_032823907.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1164989..1175996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS05775 ruvX 1165129..1165548 (+) 420 WP_032823900.1 Holliday junction resolvase RuvX -
  ACHWYH_RS05780 rdgC 1165598..1166506 (-) 909 WP_032823902.1 recombination-associated protein RdgC -
  ACHWYH_RS05785 proC 1166572..1167387 (+) 816 WP_032823904.1 pyrroline-5-carboxylate reductase -
  ACHWYH_RS05790 - 1167387..1168553 (+) 1167 WP_032823906.1 3-phenylpropionate MFS transporter -
  ACHWYH_RS05795 xerD 1168584..1169477 (+) 894 WP_005668988.1 site-specific tyrosine recombinase XerD -
  ACHWYH_RS05800 - 1169650..1169937 (+) 288 WP_005656308.1 DUF5339 domain-containing protein -
  ACHWYH_RS05805 ruvB 1169989..1170996 (-) 1008 WP_032823907.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACHWYH_RS05810 ruvA 1171004..1171618 (-) 615 WP_032823908.1 Holliday junction branch migration protein RuvA Machinery gene
  ACHWYH_RS05815 ruvC 1171681..1172253 (-) 573 WP_005662962.1 crossover junction endodeoxyribonuclease RuvC -
  ACHWYH_RS05820 - 1172300..1173040 (-) 741 WP_032823909.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ACHWYH_RS05825 nudB 1173200..1173676 (-) 477 WP_162697435.1 dihydroneopterin triphosphate diphosphatase -
  ACHWYH_RS05830 aspS 1173698..1175464 (-) 1767 WP_032823911.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36991.31 Da        Isoelectric Point: 4.7793

>NTDB_id=949915 ACHWYH_RS05805 WP_032823907.1 1169989..1170996(-) (ruvB) [Haemophilus influenzae strain GA81666]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=949915 ACHWYH_RS05805 WP_032823907.1 1169989..1170996(-) (ruvB) [Haemophilus influenzae strain GA81666]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGCGCTATTCGTCCGAAATT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTGCGTGAGCAAATGGATATTTTCATCAAGGCTGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCCCCTGGTTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCAGTGTTAGAAAAAGCGGGAGATTTGGCTGCAATGCTAACCAATCTTGAACCGCA
CGATGTGTTATTTATCGATGAAATTCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AATTAGATATTATGATTGGCGAAGGGCCAGCTGCTCGTTCTATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACCTCTATCGTGGCACGAAGTGCTGGCTGTTTAAATCTTGAATTAGAACAGCAAGCCGCTTTCGAGGTAGCTC
GTCGTTCACGAGGCACACCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTACGCAATGGGGGA
GTAATTTCGGTAGATGTGGCAAAACAAGCGCTTTCAATGTTGGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGACCTGTAGGGCTGGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTTTACAAAGAACGCCGAGAGGTCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Synechocystis sp. PCC 6803

55.34

92.239

0.51
  ruvB Helicobacter pylori 26695

54.313

93.433

0.507