Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACHWYH_RS03775 Genome accession   NZ_CP172084
Coordinates   761600..763681 (-) Length   693 a.a.
NCBI ID   WP_112103306.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 756600..768681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS03765 lldD 759404..760549 (-) 1146 WP_005649913.1 FMN-dependent L-lactate dehydrogenase LldD -
  ACHWYH_RS03770 murI 760761..761570 (-) 810 WP_005687420.1 glutamate racemase -
  ACHWYH_RS03775 recG 761600..763681 (-) 2082 WP_112103306.1 ATP-dependent DNA helicase RecG Machinery gene
  ACHWYH_RS03780 spoT 763678..765792 (-) 2115 WP_112103305.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACHWYH_RS03785 rpoZ 765865..766131 (-) 267 WP_005649900.1 DNA-directed RNA polymerase subunit omega -
  ACHWYH_RS03790 gmk 766194..766820 (-) 627 WP_005649899.1 guanylate kinase -
  ACHWYH_RS03795 gap 767071..768090 (+) 1020 WP_006995751.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78168.74 Da        Isoelectric Point: 8.4349

>NTDB_id=949905 ACHWYH_RS03775 WP_112103306.1 761600..763681(-) (recG) [Haemophilus influenzae strain GA81666]
MSLELLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFVRRPI
LSVSLSDGTSKIMLRFFNFNVGMRNSFQVGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQHYAKSLIQKYPDLAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=949905 ACHWYH_RS03775 WP_112103306.1 761600..763681(-) (recG) [Haemophilus influenzae strain GA81666]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCCTTTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCATAACCTGCAGGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCCGAACAATATTTTACTATAGAGGGAATTGTACAAACCTGTGAAGTCGCTTTTGTCCGTCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGTGGGAATGCGTAATAGTTT
TCAAGTTGGCGTGCGAGTAAAGGCCTTTGGAGAGGTAAAACGTGGGCGTCACATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCGCCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACAACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGGCATTACTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACCTTGCCATT
TCAACCCACTAATGCGCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGCGATGTGGGCTCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAACGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAACAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTTGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGCGCGGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTGAAAAAGGCGAAAAAGCAGGATTTTATCCCCATCAGTTAATTATGAC
GGCAACACCGATTCCAAGAACGTTGGCAATGACCGTCTATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GCCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGCACTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGCCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCAACGACAGTCATCGAAGTGGGTGTTGATGTGCCT
AATGCGAGTTTGATGATTATCGAAAATGCAGAGCGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTCGGTCG
AGGCAGCACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTCGGCAAAGTTTCGCAAAAACGTTTGCAAGTGCTAC
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCAGATCTAGCAGAAAGTCTGATTCGTCGTTGGTTAAATAATAAAGAGATTTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

DEAD/DEAH box helicase (DEAD)

(273-405)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

38.955

96.681

0.377
  recG/mmsA Streptococcus pneumoniae R6

39.574

94.805

0.375
  recG/mmsA Streptococcus pneumoniae R36A

39.574

94.805

0.375