Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACHWYG_RS03715 Genome accession   NZ_CP172082
Coordinates   757973..760054 (-) Length   693 a.a.
NCBI ID   WP_032824247.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA54827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752973..765054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYG_RS03705 lldD 755777..756922 (-) 1146 WP_005649913.1 FMN-dependent L-lactate dehydrogenase LldD -
  ACHWYG_RS03710 murI 757134..757943 (-) 810 WP_005687420.1 glutamate racemase -
  ACHWYG_RS03715 recG 757973..760054 (-) 2082 WP_032824247.1 ATP-dependent DNA helicase RecG Machinery gene
  ACHWYG_RS03720 spoT 760051..762165 (-) 2115 WP_032824246.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACHWYG_RS03725 rpoZ 762346..762612 (-) 267 WP_005649900.1 DNA-directed RNA polymerase subunit omega -
  ACHWYG_RS03730 gmk 762675..763301 (-) 627 WP_005649899.1 guanylate kinase -
  ACHWYG_RS03735 gap 763552..764571 (+) 1020 WP_032824244.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78084.64 Da        Isoelectric Point: 8.4349

>NTDB_id=949841 ACHWYG_RS03715 WP_032824247.1 757973..760054(-) (recG) [Haemophilus influenzae strain GA54827]
MSLELLDAVPLTSVSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRIMPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNAGMRNSFQVGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQHYAKSLIQKYPDLAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=949841 ACHWYG_RS03715 WP_032824247.1 757973..760054(-) (recG) [Haemophilus influenzae strain GA54827]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCGTTTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCATAACCTGCAGGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTATGCCAATCG
CTAATCTTCGCCCTGAACAATATTTTACTATAGAGGGAATTGTCCAAACCTGTGAAGTCGCTTTTGGCCGTCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGCGGGAATGCGTAATAGTTT
TCAAGTTGGCGTGCGAGTAAAGGCTTTTGGCGAAGTGAAACGTGGGCGTCACATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCACCCATAGTATTGGAAGAAACCCTAACGCCGATTTATTCCACGACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGGCATTACTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACCTTGCCATT
TCAACCCACTAATGCGCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGCGATGTAGGCTCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAATGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAACAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTCGGCATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATCAAAACTGGTGCCGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTGGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTGAAAAAGGCGAAAAAGCGGGATTTTATCCCCATCAGTTAATTATGAC
GGCCACGCCGATTCCGAGAACGTTGGCAATGACCGTATATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GTCGTACGCCGATAACAACAGTAGTGGTTTCTGAAGAACGTCGCGCTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAACAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCAACGACAGTCATCGAAGTGGGGGTTGATGTTCCG
AATGCTAGTTTGATGATTATCGAAAATGCAGAGCGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTCGGTCG
AGGCAGCACGGCTTCTTTTTGTGTGCTAATGTATAAACCTCCGCTAGGTAAAGTTTCGCAAAAGCGTTTGCAAGTGCTAA
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCAGATCTAGCAGAAAGTCTGATTCGTCGTTGGTTAAATAATAAAGAGATTTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

DEAD/DEAH box helicase (DEAD)

(273-405)

RecG wedge domain (RecG_wedge)

(14-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.282

100

0.495
  recG Bacillus subtilis subsp. subtilis str. 168

39.104

96.681

0.378
  recG/mmsA Streptococcus pneumoniae R6

39.422

94.805

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.422

94.805

0.374