Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   ACG3JK_RS09705 Genome accession   NZ_CP171738
Coordinates   1903391..1905406 (+) Length   671 a.a.
NCBI ID   WP_013793645.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898391..1910406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS09690 (ACG3JK_09690) secA 1899236..1901764 (+) 2529 WP_003107601.1 preprotein translocase subunit SecA -
  ACG3JK_RS09695 (ACG3JK_09695) acpS 1901863..1902216 (+) 354 WP_003102702.1 holo-ACP synthase -
  ACG3JK_RS09700 (ACG3JK_09700) alr 1902216..1903319 (+) 1104 WP_004347379.1 alanine racemase -
  ACG3JK_RS09705 (ACG3JK_09705) recG/mmsA 1903391..1905406 (+) 2016 WP_013793645.1 ATP-dependent DNA helicase RecG Machinery gene
  ACG3JK_RS09710 (ACG3JK_09710) - 1905491..1906408 (+) 918 WP_003107599.1 aldo/keto reductase family oxidoreductase -
  ACG3JK_RS09715 (ACG3JK_09715) - 1906457..1907419 (-) 963 WP_003106022.1 asparaginase -
  ACG3JK_RS09720 (ACG3JK_09720) - 1907491..1908879 (+) 1389 WP_003107598.1 Cof-type HAD-IIB family hydrolase -
  ACG3JK_RS09725 (ACG3JK_09725) - 1908909..1909361 (-) 453 WP_003103948.1 universal stress protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75499.12 Da        Isoelectric Point: 6.5210

>NTDB_id=949079 ACG3JK_RS09705 WP_013793645.1 1903391..1905406(+) (recG/mmsA) [Streptococcus parauberis strain DB-M23]
MNLQSPISELKGLGPKSAEKFHQLEIYTIEDLLIYYPFRYEDFKSKSVFDLQDGDKAVLTGQVVTPATVQYYGFKRNRLS
FKIKQDELVIAVNFFNQPYIADKVEIDKEVAIFGKWDQKKAALTGMKFLMSLEDDLQPVYHTVQGVSQTALIKAIKAAFD
ANVLDQIKENIPALLLQKYKLMPRQDAIRAMHFPKDLREYKLALRRIKFEELFYFQMHLQLLKVANKSESSGLAINFSQE
AVNAVITNLPFPLTGAQNKSLREILADMKSGQHMNRLLQGDVGSGKTVIASLAMYAAYTAGFQSALMVPTEILAEQHYDS
LSQLFPDLSIAILKSGMKVAERRTALAAIADGSVDMIVGTHALIQDAVQYHHLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQELDKVLPWIMDEIAQGAQVYVISPLIEESEALDLKN
AVALESELKDYFKESARIALMHGKMKNEDKDAIMQAFKNKETDLLVSTTVIEVGVNVPNATIMMIMDADRFGLSQLHQLR
GRVGRGHKQSYAILVANPKTDSGKKRMRIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADIVEDYNILEEARR
IASEIVSQVAWQEDDRWQAILPNLSEKGSFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=949079 ACG3JK_RS09705 WP_013793645.1 1903391..1905406(+) (recG/mmsA) [Streptococcus parauberis strain DB-M23]
ATGAATTTACAATCACCAATTTCAGAATTGAAAGGGCTTGGCCCCAAGTCTGCAGAAAAATTTCATCAATTAGAGATATA
TACCATTGAAGACTTATTGATCTATTATCCATTTCGTTATGAAGATTTCAAGAGTAAGTCAGTTTTCGACTTGCAAGATG
GTGATAAGGCTGTCTTAACTGGACAAGTGGTGACGCCAGCAACTGTCCAATATTATGGCTTCAAACGGAATCGTCTTTCC
TTTAAAATTAAACAAGACGAGCTAGTGATTGCGGTCAATTTCTTTAATCAGCCCTATATAGCTGATAAGGTTGAAATTGA
TAAGGAAGTAGCTATTTTTGGGAAATGGGATCAGAAAAAAGCTGCGCTTACAGGCATGAAATTTCTGATGTCTCTAGAAG
ATGATTTGCAACCTGTTTATCACACAGTTCAAGGAGTTAGCCAAACTGCTCTAATTAAAGCAATCAAAGCTGCATTTGAT
GCAAATGTCTTGGACCAAATTAAAGAAAATATTCCAGCATTACTTCTTCAAAAATACAAACTGATGCCTCGACAAGATGC
AATCAGAGCCATGCATTTTCCAAAAGATTTAAGGGAATACAAATTAGCTCTTCGTCGCATTAAATTTGAAGAACTCTTTT
ACTTCCAAATGCATTTACAGTTGTTAAAAGTGGCTAATAAATCTGAAAGCTCAGGTTTAGCCATCAACTTTTCGCAGGAA
GCTGTTAATGCCGTCATTACCAACCTACCTTTTCCATTAACTGGCGCACAAAATAAAAGTCTTAGAGAAATCTTAGCCGA
TATGAAATCGGGCCAACATATGAACCGTCTTTTACAGGGAGATGTTGGTTCAGGGAAAACAGTTATTGCTAGTCTAGCCA
TGTATGCCGCATACACTGCCGGCTTTCAATCAGCCTTAATGGTTCCTACAGAAATCCTCGCTGAGCAGCATTATGACAGT
CTAAGCCAACTATTTCCTGATCTTTCGATAGCTATCTTAAAATCGGGAATGAAGGTAGCTGAGCGACGAACAGCCTTAGC
AGCCATTGCTGACGGATCAGTGGATATGATTGTAGGTACCCACGCGCTGATTCAAGATGCTGTTCAATATCACCACTTGG
GACTAGTAATAACCGATGAACAGCACCGCTTCGGGGTTAAGCAACGACGAATTTTTAGAGAAAAAGGTGACAATCCAGAC
GTCCTTATGATGACGGCTACGCCCATTCCTCGTACGCTAGCCATTACCGCCTACGGCGAGATGGATGTGTCAATCATTGA
TGAACTGCCTGCAGGGCGCAAGCCGATTGTGACCCGTTGGGTCAAACATCAAGAGTTAGATAAGGTTTTGCCTTGGATTA
TGGATGAAATTGCCCAAGGCGCTCAAGTCTATGTCATCTCTCCTTTGATTGAAGAGTCCGAGGCACTGGATTTAAAAAAT
GCTGTCGCTCTTGAGAGTGAGTTGAAAGACTACTTTAAAGAGTCTGCCAGAATTGCCTTGATGCACGGGAAAATGAAGAA
TGAAGACAAGGATGCTATCATGCAAGCCTTTAAGAATAAAGAGACTGATTTGCTGGTGTCAACGACTGTTATTGAGGTTG
GTGTTAACGTTCCGAATGCAACTATAATGATGATAATGGATGCTGACCGTTTTGGTCTTAGTCAATTACATCAGCTTCGT
GGTCGGGTTGGACGTGGTCATAAGCAGTCCTATGCAATTTTAGTGGCAAATCCAAAAACTGATTCTGGTAAAAAACGGAT
GAGGATTATGACAGAAACGACAGATGGTTTTGTTTTAGCGGAGGCTGATTTGAAGATGCGTGGTTCTGGTGAAATTTTTG
GAACGCGCCAGTCAGGGATACCAGAATTTAAGACCGCTGATATTGTCGAAGATTACAATATCTTAGAAGAAGCTAGAAGA
ATTGCCAGTGAAATTGTTTCGCAAGTGGCTTGGCAAGAGGATGACCGTTGGCAAGCTATTCTTCCCAATCTTAGTGAAAA
AGGTAGCTTTGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(256-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-648)

RecG wedge domain (RecG_wedge)

(9-156)

Helicase conserved C-terminal domain (Helicase_C)

(455-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.747

100

0.697
  recG/mmsA Streptococcus pneumoniae R36A

69.747

100

0.697
  recG Bacillus subtilis subsp. subtilis str. 168

48.588

100

0.487
  recG Neisseria meningitidis strain C311

38.991

97.466

0.38