Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACG3JK_RS00140 Genome accession   NZ_CP171738
Coordinates   28982..29623 (+) Length   213 a.a.
NCBI ID   WP_003107492.1    Uniprot ID   A0ABP2SXX6
Organism   Streptococcus parauberis strain DB-M23     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 23982..34623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS00120 (ACG3JK_00120) - 24663..25403 (+) 741 WP_003102848.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  ACG3JK_RS00125 (ACG3JK_00125) pknB 25403..27142 (+) 1740 WP_003107495.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  ACG3JK_RS00130 (ACG3JK_00130) liaF 27293..27988 (+) 696 WP_037620823.1 cell wall-active antibiotics response protein LiaF -
  ACG3JK_RS00135 (ACG3JK_00135) - 27985..28989 (+) 1005 WP_003107494.1 sensor histidine kinase -
  ACG3JK_RS00140 (ACG3JK_00140) vraR 28982..29623 (+) 642 WP_003107492.1 response regulator transcription factor Regulator
  ACG3JK_RS00145 (ACG3JK_00145) - 29657..31057 (+) 1401 WP_045407608.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACG3JK_RS00150 (ACG3JK_00150) - 31057..31410 (+) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  ACG3JK_RS00155 (ACG3JK_00155) cysK 31486..32415 (-) 930 WP_003103108.1 cysteine synthase A -
  ACG3JK_RS00160 (ACG3JK_00160) - 32538..33170 (-) 633 WP_003107489.1 YigZ family protein -
  ACG3JK_RS00165 (ACG3JK_00165) comFA/cflA 33227..34531 (+) 1305 WP_045407612.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23957.60 Da        Isoelectric Point: 4.7106

>NTDB_id=948988 ACG3JK_RS00140 WP_003107492.1 28982..29623(+) (vraR) [Streptococcus parauberis strain DB-M23]
MDKIRVILVDDHEMVRLGLKSFLNMQKDIEVIGEASNGRQGIDLALELRPDVLVMDLVMPEMGGVEATLDILSKWTEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKEHDKNPELHEELTAREFDILYLLA
KGYDNQTIADELFISLKTVKTHVSNILSKLDVDDRTQAVVYAFQHHIVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=948988 ACG3JK_RS00140 WP_003107492.1 28982..29623(+) (vraR) [Streptococcus parauberis strain DB-M23]
ATGGATAAAATACGTGTCATATTAGTTGATGACCATGAGATGGTGCGTTTAGGCTTAAAAAGCTTCTTAAATATGCAAAA
AGACATAGAAGTTATTGGTGAAGCATCTAATGGTCGCCAAGGCATTGATTTAGCTTTAGAACTACGTCCAGATGTTTTAG
TCATGGATTTAGTGATGCCTGAAATGGGTGGAGTTGAAGCAACATTAGATATTCTTTCAAAATGGACAGAAGCTAAAGTT
TTAGTACTGACTTCCTATCTTGATAATGAGAAAATCTATCCAGTTATTGATGCCGGAGCCAAAGGTTATATGTTAAAGAC
TTCAAGTGCTGCAGAAATCTTAAATGCAATTAGAAAAGTAGCAAAAGGCCAACTAGCTATCGAGACAGAAGTTGACAAAA
AAATAAAAGAGCATGATAAAAATCCAGAATTGCATGAGGAGTTAACAGCTCGGGAATTTGATATTTTATATCTGTTAGCC
AAAGGTTATGATAATCAAACGATTGCTGATGAGTTATTTATTTCATTAAAAACTGTAAAAACACATGTTTCAAATATTCT
TTCTAAATTGGACGTCGACGATCGAACACAAGCTGTAGTCTACGCATTCCAACACCATATAGTGCCACAAGATGACAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

35.586

100

0.371