Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   WDW95_RS02850 Genome accession   NZ_CP147857
Coordinates   589581..590297 (-) Length   238 a.a.
NCBI ID   WP_167841911.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain APC3967     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 584581..595297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS02835 - 585358..586317 (+) 960 WP_061774957.1 YbbR-like domain-containing protein -
  WDW95_RS02840 glmM 586391..587746 (+) 1356 WP_061774956.1 phosphoglucosamine mutase -
  WDW95_RS02845 nox 587876..589204 (-) 1329 WP_368651711.1 H2O-forming NADH oxidase -
  WDW95_RS02850 treR 589581..590297 (-) 717 WP_167841911.1 trehalose operon repressor Regulator
  WDW95_RS02855 - 590407..591279 (+) 873 WP_167841142.1 Cof-type HAD-IIB family hydrolase -
  WDW95_RS02860 - 591424..592413 (+) 990 WP_096040176.1 LacI family DNA-binding transcriptional regulator -
  WDW95_RS02865 - 592964..594460 (+) 1497 WP_368651712.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27757.88 Da        Isoelectric Point: 7.4144

>NTDB_id=948989 WDW95_RS02850 WP_167841911.1 589581..590297(-) (treR) [Lactococcus raffinolactis strain APC3967]
MKKYEIILHDLEYKIKNKTYQENDLLPSENELVKIYDASRATIRQALKILEEKGLIQKQKGRGSVVIASSKLNFPISGLT
SYKELQNSLGFESVTEVIKFDKITVDSELAAKTLFEIGIPVWRIIRVRKIDGEAVVLDHDFVKYDICPNMTKTDVAYSLY
DYLEKQLKIEISFAQKEITIDFVNDEDRQLLDLNLLDRHVVSVKSHVFLNDASVFQYTDSRHQVDKFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=948989 WDW95_RS02850 WP_167841911.1 589581..590297(-) (treR) [Lactococcus raffinolactis strain APC3967]
ATGAAAAAATATGAAATAATTTTACACGATTTGGAATACAAAATAAAAAATAAGACTTATCAGGAAAACGATCTCCTGCC
TAGTGAAAATGAATTGGTCAAAATCTACGACGCCAGTAGAGCAACGATTCGCCAAGCGCTGAAAATTTTGGAAGAAAAGG
GGTTAATTCAGAAACAAAAAGGGCGAGGCTCTGTGGTTATTGCTTCTAGCAAACTTAATTTTCCGATTTCTGGCTTAACC
AGCTACAAGGAACTACAAAATTCACTCGGATTTGAAAGTGTCACTGAAGTCATCAAATTTGACAAAATCACAGTTGACAG
TGAACTTGCTGCAAAAACACTTTTTGAAATCGGAATCCCTGTGTGGCGTATCATACGCGTTCGTAAGATTGACGGTGAAG
CCGTCGTGCTTGATCATGACTTCGTCAAATATGATATTTGTCCCAATATGACCAAAACAGATGTCGCTTATTCACTCTAC
GACTACCTTGAAAAACAGCTGAAAATTGAGATTTCCTTCGCTCAGAAAGAAATTACCATTGATTTCGTTAATGACGAAGA
TCGGCAACTCTTGGACCTGAATCTCTTGGACCGCCATGTCGTCAGTGTCAAAAGCCATGTTTTTCTCAATGATGCAAGCG
TCTTTCAATACACGGATAGTCGACATCAAGTTGATAAATTCCGGTTCACTGAATTTGCCAGACGGCAAAAACGTTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

49.367

99.58

0.492