Detailed information NTG0948984

Bioinformatically predicted

Overview

• Name: comFA/cflA
• Type: Machinery gene
• Locus tag: WDW95_RS01730
• Genome accession: NZ_CP147857
• Coordinates: 343998..345272 (-)
• Length: 424 a.a.
• NCBI ID: WP_368651667.1
• Uniprot ID: -
• Organism: Lactococcus raffinolactis strain APC3967
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 338998..350272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDW95_RS01695	obgE	339401..340720 (+)	1320	WP_096039988.1	GTPase ObgE	-
WDW95_RS01700	-	340807..340983 (+)	177	WP_003137484.1	hypothetical protein	-
WDW95_RS01705	-	340980..341966 (+)	987	WP_061773784.1	PhoH family protein	-
WDW95_RS01710	-	341959..342417 (+)	459	WP_368651666.1	HIT family protein	-
WDW95_RS01715	ybeY	342475..342966 (+)	492	WP_061773786.1	rRNA maturation RNase YbeY	-
WDW95_RS01720	-	342950..343351 (+)	402	WP_061773787.1	diacylglycerol kinase family protein	-
WDW95_RS01725	-	343354..344001 (-)	648	WP_138492266.1	ComF family protein	-
WDW95_RS01730	comFA/cflA	343998..345272 (-)	1275	WP_368651667.1	DEAD/DEAH box helicase	Machinery gene
WDW95_RS01735	-	345316..345939 (+)	624	WP_061773790.1	YigZ family protein	-
WDW95_RS01745	-	346760..347623 (+)	864	WP_096824017.1	S1 RNA-binding domain-containing protein	-
WDW95_RS01750	msrA	347620..348141 (+)	522	WP_061773792.1	peptide-methionine (S)-S-oxide reductase MsrA	-
WDW95_RS01755	-	348138..348347 (+)	210	WP_061773793.1	YozE family protein	-
WDW95_RS01760	rplK	348589..349014 (+)	426	WP_003139488.1	50S ribosomal protein L11	-
WDW95_RS01765	rplA	349187..349873 (+)	687	WP_061773794.1	50S ribosomal protein L1	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 47709.85 Da
• Isoelectric Point: 9.0199

>NTDB_id=948984 WDW95_RS01730 WP_368651667.1 343998..345272(-) (comFA/cflA) [Lactococcus raffinolactis strain APC3967]
MDNLYCRLLTRQELGGDFENLPKDTETFPGMSITPKSVTCHRCGTTSSLQAVKLEIPAYFCPECLHLGRVRSDELLYHLP
QQDFPPQDSLLWSGQLTPYQAEISKELMAAVDQKTQILVHAVTGAGKTEMIYAAVARVISSGGAVGIATPRTDVARELHA
RLSRDFSIPISLLHAESEPYFPTPLVISTTHQLLRFRHAFDLLIIDEVDAFPYADNDALYFAAEQSRKPTATLIYLTATS
TDKLDKLVKTSQLKQVSLSRRFYGNPLVVPKVIFSGSEKRIYRHIKKQRETGFPLLIFVPVIAFGQSFTERLRRLFPDEK
IGFVASTSEERAEEIDRFRQGQLTILVSTTILERGVTFPKVDVFVVNSHHRLFTKSSLIQIAGRAGRSPDRPTGLVYFFH
TGLTRDMTRAISEIRQMNRLGGFT

Nucleotide

• Length: 1275 bp

>NTDB_id=948984 WDW95_RS01730 WP_368651667.1 343998..345272(-) (comFA/cflA) [Lactococcus raffinolactis strain APC3967]
ATGGATAACTTATACTGTCGCCTATTAACGCGACAAGAACTGGGGGGTGACTTCGAAAATCTCCCAAAAGACACCGAGAC
CTTCCCTGGGATGTCAATCACACCAAAATCGGTGACTTGCCATCGATGCGGGACAACATCTTCTCTTCAAGCAGTTAAGT
TAGAGATTCCTGCTTACTTTTGTCCAGAGTGCCTTCACCTCGGACGGGTTCGGTCTGATGAATTACTCTACCACTTACCT
CAGCAAGATTTCCCACCTCAAGATTCCCTCCTTTGGAGCGGCCAACTCACGCCCTATCAAGCTGAAATTTCAAAGGAACT
GATGGCTGCAGTTGATCAGAAAACTCAGATTTTAGTCCATGCTGTTACAGGGGCTGGTAAAACTGAGATGATTTATGCTG
CCGTGGCTAGAGTCATCTCAAGTGGTGGGGCCGTTGGGATTGCGACGCCCAGGACCGACGTTGCCCGCGAACTACATGCC
AGATTATCTCGCGACTTTTCTATCCCAATCTCTCTCCTACACGCTGAATCAGAGCCTTACTTTCCGACACCACTCGTCAT
TTCAACCACCCACCAACTACTGCGCTTTCGCCATGCCTTTGATCTATTGATTATCGACGAAGTGGATGCCTTTCCCTACG
CTGATAATGATGCCCTTTACTTTGCGGCTGAGCAGTCCCGAAAACCTACCGCAACGTTGATTTATCTAACCGCGACATCT
ACTGACAAACTCGATAAGCTGGTCAAAACTAGCCAGTTAAAACAGGTATCTTTGTCCCGTCGCTTTTATGGCAACCCACT
CGTTGTCCCAAAAGTCATCTTCAGTGGCAGCGAAAAACGCATCTACCGTCACATCAAAAAACAGCGGGAGACAGGTTTTC
CACTCCTCATTTTCGTGCCCGTCATTGCCTTTGGTCAATCATTCACAGAGCGCTTGCGACGTCTGTTTCCTGACGAAAAA
ATTGGCTTTGTAGCCTCTACTAGTGAGGAGCGTGCTGAGGAGATTGACCGTTTTCGACAAGGGCAACTCACGATTTTAGT
TTCGACGACCATTTTAGAGCGAGGGGTGACTTTTCCTAAGGTTGATGTTTTTGTGGTCAATAGTCACCACCGTCTCTTTA
CCAAATCAAGTTTGATTCAGATTGCGGGAAGGGCTGGCCGAAGCCCTGATCGGCCGACTGGTCTGGTATACTTTTTTCAT
ACTGGCCTAACCAGAGACATGACCCGAGCTATTTCAGAAATTCGCCAGATGAATCGACTGGGAGGTTTTACATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (95-239)

• Helicase conserved C-terminal domain (Helicase_C) (280-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA/cflA	Streptococcus mitis SK321	55.22	100	0.561
comFA/cflA	Streptococcus pneumoniae Rx1	55.269	100	0.557
comFA/cflA	Streptococcus pneumoniae D39	55.269	100	0.557
comFA/cflA	Streptococcus pneumoniae R6	55.269	100	0.557
comFA/cflA	Streptococcus pneumoniae TIGR4	55.035	100	0.554
comFA/cflA	Streptococcus mitis NCTC 12261	54.524	100	0.554
comFA	Lactococcus lactis subsp. cremoris KW2	56.888	92.453	0.526
comFA	Bacillus subtilis subsp. subtilis str. 168	37.019	98.113	0.363