Detailed information NTG0948984

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ACG3JL_RS10085
• Genome accession: NZ_CP171737
• Coordinates: 1986556..1987554 (+)
• Length: 332 a.a.
• NCBI ID: WP_013793591.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M18
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1981556..1992554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JL_RS10055 (ACG3JL_10055)	purE	1981794..1982282 (+)	489	WP_003107462.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
ACG3JL_RS10060 (ACG3JL_10060)	purK	1982269..1983360 (+)	1092	WP_013793587.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
ACG3JL_RS10065 (ACG3JL_10065)	-	1983489..1983716 (+)	228	WP_013793588.1	hypothetical protein	-
ACG3JL_RS10070 (ACG3JL_10070)	purB	1983931..1985223 (+)	1293	WP_013793589.1	adenylosuccinate lyase	-
ACG3JL_RS10075 (ACG3JL_10075)	comR	1985340..1986257 (+)	918	WP_013793590.1	helix-turn-helix transcriptional regulator	Regulator
ACG3JL_RS10080 (ACG3JL_10080)	-	1986323..1986421 (+)	99	WP_202951667.1	quorum-sensing system DWW-type pheromone	-
ACG3JL_RS10085 (ACG3JL_10085)	ruvB	1986556..1987554 (+)	999	WP_013793591.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ACG3JL_RS10090 (ACG3JL_10090)	-	1987778..1988206 (+)	429	WP_003107455.1	low molecular weight protein-tyrosine-phosphatase	-
ACG3JL_RS10095 (ACG3JL_10095)	-	1988235..1988636 (+)	402	WP_003105881.1	membrane protein	-
ACG3JL_RS10100 (ACG3JL_10100)	-	1988633..1990411 (+)	1779	WP_003107454.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37584.09 Da
• Isoelectric Point: 4.5818

>NTDB_id=948984 ACG3JL_RS10085 WP_013793591.1 1986556..1987554(+) (ruvB) [Streptococcus parauberis strain DB-M18]
MTRILDEELMGDEALVERTLRPQYLREYIGQDKVKDQLTIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRMPMVVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQVDDLTEIVERTADIFEMEIVHEAAHELARRSRGTPRIANRLLKRVRDYAQIMGDGVIT
DTITDKALDMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATEK
AYRHLHYPYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=948984 ACG3JL_RS10085 WP_013793591.1 1986556..1987554(+) (ruvB) [Streptococcus parauberis strain DB-M18]
ATGACTAGAATTTTAGATGAAGAATTAATGGGTGATGAAGCTTTAGTTGAGCGCACCCTTCGTCCTCAATATTTAAGAGA
GTATATCGGACAGGATAAGGTGAAAGACCAGCTGACTATTTTTATTGAAGCCGCCAAAATGCGTGATGAATCACTAGACC
ACGTGCTCTTGTTTGGGCCTCCTGGACTTGGTAAAACAACCATGGCTTTTGTGATTGCTAATGAACTAGGTGTCAACCTC
AAGCAAACGTCTGGTCCAGCAATTGAAAAGGCTGGTGATTTGGTAGCTGTTTTGAATGACTTGGAACCAGGAGATGTGCT
TTTCATTGATGAAATCCACCGGATGCCAATGGTAGTTGAAGAAGTCCTCTACAGTGCTATGGAAGACTTCTATATTGATA
TTATGATTGGGGCTGGTGATACAAGCCGTAGTGTCCATTTGGATTTACCTCCTTTTACCTTAATTGGAGCAACTACAAGG
GCAGGGATGCTCTCTAATCCTTTGCGTGCCCGTTTTGGAATCACTGGACACATGGAATATTACCAAGTTGATGATCTCAC
AGAAATTGTCGAACGGACAGCTGATATCTTTGAAATGGAAATTGTCCATGAAGCAGCCCATGAATTGGCCCGCCGAAGTC
GAGGAACACCTCGTATAGCCAATCGTTTATTGAAGCGCGTGCGCGACTATGCCCAAATTATGGGTGATGGGGTAATTACA
GATACTATTACTGACAAAGCTTTAGATATGCTTGATGTTGACCATGAGGGATTGGACTACGTCGATCAGAAAATTTTACG
TACGATGATTGAAATGTACAATGGTGGACCTGTTGGTCTTGGGACACTGTCAGTGAATATTGCTGAGGAAAGAGACACAG
TTGAAGATATGTATGAACCCTATCTGATTCAAAAGGGCTTTATCATGCGAACACGGACTGGCCGTGTTGCGACAGAAAAA
GCATATCGTCATTTGCATTATCCTTACCTTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.361	100	0.904
ruvB	Streptococcus pneumoniae R6	90.06	100	0.901
ruvB	Streptococcus pneumoniae D39	90.06	100	0.901
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.111	97.59	0.596
ruvB	Helicobacter pylori 26695	49.39	98.795	0.488
ruvB	Synechocystis sp. PCC 6803	50.162	93.072	0.467