Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACG3JJ_RS02405 Genome accession   NZ_CP171733
Coordinates   433179..433772 (+) Length   197 a.a.
NCBI ID   WP_003107862.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 428179..438772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JJ_RS02390 (ACG3JJ_02390) - 428725..429870 (+) 1146 WP_045407338.1 site-specific integrase -
  ACG3JJ_RS02395 (ACG3JJ_02395) hexB 429967..431943 (+) 1977 WP_041828658.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACG3JJ_RS02400 (ACG3JJ_02400) - 431954..433177 (+) 1224 WP_003103803.1 MFS transporter -
  ACG3JJ_RS02405 (ACG3JJ_02405) ruvA 433179..433772 (+) 594 WP_003107862.1 Holliday junction branch migration protein RuvA Machinery gene
  ACG3JJ_RS02410 (ACG3JJ_02410) - 433776..434327 (+) 552 WP_096633379.1 DNA-3-methyladenine glycosylase I -
  ACG3JJ_RS02415 (ACG3JJ_02415) cinA 434716..435987 (+) 1272 WP_003103228.1 competence/damage-inducible protein A Machinery gene
  ACG3JJ_RS02420 (ACG3JJ_02420) recA 436067..437206 (+) 1140 WP_003102546.1 recombinase RecA -
  ACG3JJ_RS02425 (ACG3JJ_02425) spx 437560..437958 (+) 399 WP_003104943.1 transcriptional regulator Spx -
  ACG3JJ_RS02430 (ACG3JJ_02430) - 438072..438341 (+) 270 WP_003104158.1 IreB family regulatory phosphoprotein -
  ACG3JJ_RS02435 (ACG3JJ_02435) ruvX 438338..438757 (+) 420 WP_003105581.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21778.23 Da        Isoelectric Point: 5.0776

>NTDB_id=948516 ACG3JJ_RS02405 WP_003107862.1 433179..433772(+) (ruvA) [Streptococcus parauberis strain DB-M5]
MFDYIKGQLTKITAKYIVVEANGLGYIIYVANPYSFSDSVNQQVTIYLHQVIREDAHLLFGFHTEEEKDVFLKLISVSGI
GPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVEEPKDSAPTSKANAGGNLQLDEAIEALL
ALGYKATELKKIRAFFEGTDETAEQYIKSALKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=948516 ACG3JJ_RS02405 WP_003107862.1 433179..433772(+) (ruvA) [Streptococcus parauberis strain DB-M5]
ATGTTTGATTATATAAAAGGTCAATTAACTAAAATTACTGCTAAATATATTGTGGTCGAAGCTAATGGTTTAGGCTATAT
TATCTATGTTGCTAATCCTTATAGTTTTTCTGACAGTGTCAATCAACAGGTCACTATTTATTTACACCAAGTTATTCGTG
AGGACGCTCACCTCTTATTTGGTTTTCATACAGAAGAGGAAAAAGATGTCTTCTTGAAACTCATCTCAGTTTCTGGAATT
GGTCCTATGACTGCGCTTGCGATTGTCGCCGTCGACGATAATGAAGGCTTAGTCATGGCCATTGACAACAGTGATATCAA
GTACTTAATGAAATTCCCTAAAATTGGTAAGAAAACAGCTCAGCAAATGATTTTAGACTTAGCTGGTAAGTTTGTTGAGG
AACCTAAAGATAGTGCCCCAACAAGTAAAGCAAACGCGGGTGGCAATCTACAACTTGATGAAGCTATTGAAGCACTACTT
GCACTGGGCTACAAAGCAACAGAATTGAAGAAAATTCGAGCTTTCTTTGAAGGAACAGATGAAACAGCTGAGCAGTATAT
TAAATCAGCTCTTAAAATGTTGATGAAAGGTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

66.162

100

0.665
  ruvA Streptococcus pneumoniae D39

66.162

100

0.665
  ruvA Streptococcus pneumoniae TIGR4

65.99

100

0.66
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.063

100

0.431