Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   ACG3JH_RS09555 Genome accession   NZ_CP171731
Coordinates   1867354..1869396 (+) Length   680 a.a.
NCBI ID   WP_259966597.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1862354..1874396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS09540 (ACG3JH_09540) secA 1863226..1865754 (+) 2529 WP_003107601.1 preprotein translocase subunit SecA -
  ACG3JH_RS09545 (ACG3JH_09545) acpS 1865853..1866206 (+) 354 WP_003102702.1 holo-ACP synthase -
  ACG3JH_RS09550 (ACG3JH_09550) alr 1866206..1867309 (+) 1104 WP_004347379.1 alanine racemase -
  ACG3JH_RS09555 (ACG3JH_09555) recG/mmsA 1867354..1869396 (+) 2043 WP_259966597.1 ATP-dependent DNA helicase RecG Machinery gene
  ACG3JH_RS09560 (ACG3JH_09560) - 1869481..1870398 (+) 918 WP_003107599.1 aldo/keto reductase family oxidoreductase -
  ACG3JH_RS09565 (ACG3JH_09565) - 1870447..1871409 (-) 963 WP_003106022.1 asparaginase -
  ACG3JH_RS09570 (ACG3JH_09570) - 1871481..1872869 (+) 1389 WP_003107598.1 Cof-type HAD-IIB family hydrolase -
  ACG3JH_RS09575 (ACG3JH_09575) - 1872899..1873351 (-) 453 WP_003103948.1 universal stress protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 76656.38 Da        Isoelectric Point: 6.5217

>NTDB_id=948387 ACG3JH_RS09555 WP_259966597.1 1867354..1869396(+) (recG/mmsA) [Streptococcus parauberis strain DB-M1]
MNDEGYKRYMNLQSPISELKGLGPKSAEKFHQLEIYTIEDLLIYYPFRYEDFKSKSVFDLQDGDKAVLTGQVVTPATVQY
YGFKRNRLSFKIKQDELVIAVNFFNQPYIADKVEIDKEVAIFGKWDQKKAALTGMKFLMSLEDDLQPVYHTVQGVSQTAL
IKAIKAAFDANVLDQIKENIPALLLQKYKLMPRQDAIRAMHFPKDLREYKLALRRIKFEELFYFQMHLQLLKVANKSESS
GLAINFSQEAVNAVITNLPFPLTGAQNKSLREILADMKSGQHMNRLLQGDVGSGKTVIASLAMYAAYTAGFQSALMVPTE
ILAEQHYDSLSQLFPDLSIAILKSGMKVAERRTALAAIADGSVDMIVGTHALIQDAVQYHHLGLVITDEQHRFGVKQRRI
FREKGDNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQELDKVLPWIMDEIAQGAQVYVISPLIE
ESEALDLKNAVALESELKDYFKESARIALMHGKMKNEDKDAIMQAFKNKETDLLVSTTVIEVGVNVPNATIMMIMDADRF
GLSQLHQLRGRVGRGHKQSYAILVANPKTDSGKKRMRIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADIVED
YNILEEARRIASEIVSQVAWQEDDRWQAILPNLSEKGSFD

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=948387 ACG3JH_RS09555 WP_259966597.1 1867354..1869396(+) (recG/mmsA) [Streptococcus parauberis strain DB-M1]
ATTAATGATGAGGGGTATAAGAGATATATGAATTTACAATCACCAATTTCAGAATTGAAAGGGCTTGGCCCCAAGTCTGC
AGAAAAATTTCATCAATTAGAGATATATACCATTGAAGACTTATTGATCTATTATCCATTTCGTTATGAAGATTTCAAGA
GTAAGTCAGTTTTCGACTTGCAAGATGGTGATAAGGCTGTCTTAACTGGACAAGTGGTGACGCCAGCAACTGTCCAATAT
TATGGCTTCAAACGGAATCGTCTTTCCTTTAAAATTAAACAAGACGAGCTAGTGATTGCGGTCAATTTCTTTAATCAGCC
CTATATAGCTGATAAGGTTGAAATTGATAAGGAAGTAGCTATTTTTGGGAAATGGGATCAGAAAAAAGCTGCGCTTACAG
GCATGAAATTTCTGATGTCTCTAGAAGATGATTTGCAACCTGTTTATCACACAGTTCAAGGAGTTAGCCAAACTGCTCTA
ATTAAAGCAATCAAAGCTGCATTTGATGCAAATGTCTTGGACCAAATTAAAGAAAATATTCCAGCATTACTTCTTCAAAA
ATACAAACTGATGCCTCGACAAGATGCAATCAGAGCCATGCATTTTCCAAAAGATTTAAGGGAATACAAATTAGCTCTTC
GTCGCATTAAATTTGAAGAACTCTTTTACTTCCAAATGCATTTACAGTTGTTAAAAGTGGCTAATAAATCTGAAAGCTCA
GGTTTAGCCATCAACTTTTCGCAGGAAGCTGTTAATGCCGTCATTACCAACCTACCTTTTCCATTAACTGGCGCACAAAA
TAAAAGTCTTAGAGAAATCTTAGCCGATATGAAATCGGGCCAACATATGAACCGTCTTTTACAGGGAGATGTTGGTTCAG
GGAAAACAGTTATTGCTAGTCTAGCCATGTATGCCGCATACACTGCCGGCTTTCAATCAGCCTTAATGGTTCCTACAGAA
ATCCTCGCTGAGCAGCATTATGACAGTCTAAGCCAACTATTTCCTGATCTTTCGATAGCTATCTTAAAATCGGGAATGAA
GGTAGCTGAGCGACGAACAGCCTTAGCAGCCATTGCTGACGGATCAGTGGATATGATTGTAGGTACCCACGCGCTGATTC
AAGATGCTGTTCAATATCACCACTTGGGACTAGTAATAACCGATGAACAGCACCGCTTCGGGGTTAAGCAACGACGAATT
TTTAGAGAAAAAGGTGACAATCCAGACGTCCTTATGATGACGGCTACGCCCATTCCTCGTACGCTAGCCATTACCGCCTA
CGGCGAGATGGATGTGTCAATCATTGATGAACTGCCTGCAGGGCGCAAGCCGATTGTGACCCGTTGGGTCAAACATCAAG
AGTTAGATAAGGTTTTGCCTTGGATTATGGATGAAATTGCCCAAGGCGCTCAAGTCTATGTCATCTCTCCTTTGATTGAA
GAGTCCGAGGCACTGGATTTAAAAAATGCTGTCGCTCTTGAGAGTGAGTTGAAAGACTACTTTAAAGAGTCTGCCAGAAT
TGCCTTGATGCACGGGAAAATGAAGAATGAAGACAAGGATGCTATCATGCAAGCCTTTAAGAATAAAGAGACTGATTTGC
TGGTGTCAACGACTGTTATTGAGGTTGGTGTTAACGTTCCGAATGCAACTATAATGATGATAATGGATGCTGACCGTTTT
GGTCTTAGTCAATTACATCAGCTTCGTGGTCGGGTTGGACGTGGTCATAAGCAGTCCTATGCAATTTTAGTGGCAAATCC
AAAAACTGATTCTGGTAAAAAACGGATGAGGATTATGACAGAAACGACAGATGGTTTTGTTTTAGCGGAGGCTGATTTGA
AGATGCGTGGTTCTGGTGAAATTTTTGGAACGCGCCAGTCAGGGATACCAGAATTTAAGACCGCTGATATTGTCGAAGAT
TACAATATCTTAGAAGAAGCTAGAAGAATTGCCAGTGAAATTGTTTCGCAAGTGGCTTGGCAAGAGGATGACCGTTGGCA
AGCTATTCTTCCCAATCTTAGTGAAAAAGGTAGCTTTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(464-575)

RecG wedge domain (RecG_wedge)

(18-165)

DEAD/DEAH box helicase (DEAD)

(265-420)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(602-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.747

98.676

0.688
  recG/mmsA Streptococcus pneumoniae R36A

69.747

98.676

0.688
  recG Bacillus subtilis subsp. subtilis str. 168

48.588

98.971

0.481
  recG Neisseria meningitidis strain C311

38.991

96.176

0.375