Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | WDM00_RS04985 | Genome accession | NZ_CP147726 |
| Coordinates | 1056318..1056629 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain CNCTC 6536 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1051318..1061629
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WDM00_RS04970 (WDM00_04970) | lon | 1051355..1053715 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| WDM00_RS04975 (WDM00_04975) | - | 1053899..1054171 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| WDM00_RS04980 (WDM00_04980) | ppiD | 1054324..1056183 (+) | 1860 | WP_002053088.1 | peptidylprolyl isomerase | - |
| WDM00_RS04985 (WDM00_04985) | comEA | 1056318..1056629 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| WDM00_RS04990 (WDM00_04990) | cmk | 1056812..1057489 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| WDM00_RS04995 (WDM00_04995) | rpsA | 1057598..1059268 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| WDM00_RS05000 (WDM00_05000) | ihfB | 1059557..1059835 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| WDM00_RS05005 (WDM00_05005) | - | 1059974..1060255 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| WDM00_RS05010 (WDM00_05010) | lapB | 1060267..1061436 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=948231 WDM00_RS04985 WP_001166105.1 1056318..1056629(+) (comEA) [Vibrio cholerae strain CNCTC 6536]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=948231 WDM00_RS04985 WP_001166105.1 1056318..1056629(+) (comEA) [Vibrio cholerae strain CNCTC 6536]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |