Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IG620_RS13700 Genome accession   NZ_CP147682
Coordinates   2839772..2841196 (+) Length   474 a.a.
NCBI ID   WP_336017908.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834772..2846196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS13680 (IG620_13680) thrC 2835056..2836195 (+) 1140 WP_004281061.1 threonine synthase -
  IG620_RS13685 (IG620_13685) - 2836253..2837314 (-) 1062 WP_191112161.1 serine hydrolase -
  IG620_RS13690 (IG620_13690) - 2837534..2838169 (+) 636 WP_004281059.1 response regulator -
  IG620_RS13695 (IG620_13695) pilS 2838192..2839757 (+) 1566 WP_336018036.1 ATP-binding protein Regulator
  IG620_RS13700 (IG620_13700) pilR 2839772..2841196 (+) 1425 WP_336017908.1 sigma-54 dependent transcriptional regulator Regulator
  IG620_RS13705 (IG620_13705) - 2841197..2842369 (-) 1173 WP_262466452.1 S41 family peptidase -
  IG620_RS13710 (IG620_13710) gpmI 2842401..2843948 (-) 1548 WP_336017905.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IG620_RS13715 (IG620_13715) lptG 2844073..2845143 (-) 1071 WP_004281054.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53571.75 Da        Isoelectric Point: 6.0366

>NTDB_id=948022 IG620_RS13700 WP_336017908.1 2839772..2841196(+) (pilR) [Acinetobacter lwoffii strain CCTCC M20191004]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEDAKKCLANHQYDACLTDLNLPDGNGLELLDWIGNLYPTLP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFMQKICQEWGIPNKKLTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATETLIAPKKLPEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=948022 IG620_RS13700 WP_336017908.1 2839772..2841196(+) (pilR) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGAATGGGGAACAACAACCACTGGTGCTCTTGGTGGATGATGAGGAGGATTTATGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGCACGCACATTGCCCATCGTTTGGAAGACGCTAAAAAATGCCTTGCCAATCATCAATATGATGCCT
GTCTGACCGACCTGAATCTGCCCGATGGCAATGGTTTGGAGTTACTGGATTGGATTGGCAATCTTTACCCGACACTTCCG
GTCGCGGTTCTGACCGCCTATGGCAATATGGAAATCGCCATTGCTGCGCTCAAAGCAGGGGCTTTTGACTTTGTCAGCAA
ACCGATTAATCAAAAACACCTAGAGCAGCTCTTACAAAAAGCGCTGAATAAACCGGTGGATTATTCGCATAATAATCCGA
ACGATGCACTCGAACATAAAATGCTGATTGGACAATCCATGCCAATTCAGCAATTACGCATTACCTTACAAAAAATTGCC
CGATCCCAGGCACCAGTTTTTATCACAGGGGAATCAGGCACAGGCAAGGAAGTCGTGGCCAATCTGGTACATCGCCTGAG
TAACCGCAACGAAGGTCCTTTTATTGCGATTAACTGTGGCGCCATTCCGACTGAGTTGATGGAAAGTGAACTCTTTGGAC
ATAAAAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGCCTGATTCAATCTGCCCATGGTGGCAGCCTGTTTTTG
GATGAAATTGCAGAATTACCGCTTTCCATGCAGGTCAAACTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCACTCGG
TTCAGATACCGAAATTGATGTGGATTTCCGTGTAATCAGTGCCACCCATCAGGATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTAATGGATCTGACTTTACCGCCGCTGCGTGAACGCGGCCAGGATATT
CTGTTACTGGCTGAACACTTTATGCAGAAGATTTGTCAGGAATGGGGAATTCCCAATAAAAAACTGACCGAACGCAGTAA
AGAGTTCTTATTGGGACAATATTATCCAGGTAATGTACGTGAATTGCGTAATATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTACAGAGTGCACCGCTACGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACGAGCGAGATCATTGCGACCGAAACCCTGATTGCACCTAAAAAGCTGCCTGAAGAGGGCTTAGAGCTGTATTTGGA
AAAGGTCGAGAAAGAGATTTTACTGAATGCGCTGAATCTGACCCACTGGAACCGGACACTGGCCGCCAAAAAACTCGGCA
TGTCGTTCCGTTCCCTGCGCTACCGCTTGAAAAAGTTCGGACTGGATACCGAAGAAGACGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.84

100

0.738
  pilR Pseudomonas aeruginosa PAK

49.241

97.257

0.479