Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IG620_RS13695 Genome accession   NZ_CP147682
Coordinates   2838192..2839757 (+) Length   521 a.a.
NCBI ID   WP_336018036.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833192..2844757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS13675 (IG620_13675) - 2833692..2834999 (+) 1308 WP_034605826.1 homoserine dehydrogenase -
  IG620_RS13680 (IG620_13680) thrC 2835056..2836195 (+) 1140 WP_004281061.1 threonine synthase -
  IG620_RS13685 (IG620_13685) - 2836253..2837314 (-) 1062 WP_191112161.1 serine hydrolase -
  IG620_RS13690 (IG620_13690) - 2837534..2838169 (+) 636 WP_004281059.1 response regulator -
  IG620_RS13695 (IG620_13695) pilS 2838192..2839757 (+) 1566 WP_336018036.1 ATP-binding protein Regulator
  IG620_RS13700 (IG620_13700) pilR 2839772..2841196 (+) 1425 WP_336017908.1 sigma-54 dependent transcriptional regulator Regulator
  IG620_RS13705 (IG620_13705) - 2841197..2842369 (-) 1173 WP_262466452.1 S41 family peptidase -
  IG620_RS13710 (IG620_13710) gpmI 2842401..2843948 (-) 1548 WP_336017905.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59464.65 Da        Isoelectric Point: 6.3545

>NTDB_id=948021 IG620_RS13695 WP_336018036.1 2838192..2839757(+) (pilS) [Acinetobacter lwoffii strain CCTCC M20191004]
MAQKSSYSALNQYHLGIWYSAYRLLISTGLLLIFLLTYPELTTDYQYPQLYYYALGIGVAINTVQLFALKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLIAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAIRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACNLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQLLQQMIGRQATRIDRIIQDTLNMVKNKETHPIPIHLNDFIPLFIQEDLADIHD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=948021 IG620_RS13695 WP_336018036.1 2838192..2839757(+) (pilS) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGGCACAAAAATCCAGTTATTCTGCGCTCAATCAATATCATCTCGGTATCTGGTATAGCGCTTATCGCTTGCTGATCAG
CACCGGCCTACTGCTGATTTTTCTGCTGACCTACCCCGAACTCACCACCGATTATCAATATCCGCAGCTGTATTATTATG
CGCTAGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGCGCTGAAATGGATCAGACGACTGATCCAGCCGCAGCTG
ATCATGATTTTCTTTAGCGATGTCTGCGTTCTAAGTTTGCTGACTTTGGCGAGCGACGGTCCTAATCTGCAAATCGGGTT
GCTGTTTGTGATTACCATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTAGTCGTCACCCTCATTGCGGTCA
TCAGTGTTATTTATCAGCATTTTATCGGCAGTATTTTTGCGTTTTCTTCCTTAAGCAATATCAGTAATAGCGCCTTGCTG
GCCTTTTTATTTTTTGTGGTCTATGGCACTGGGCAGATCGCCATACGCCGTTTTCAGATTCTGGAAAATCTAAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAGCAGATTGAAACCGGCTATCTGGTTCTGG
ATGAAAACTACCATGTGGTACTCAGTAATCCTGCCGCCTGTAATCTTCTTGGAATTGAGTCCAAATACGGCCATGAGAAA
TTCACTTTATCTCAGTCACAGCCAGATTTATTTGAACTGATCCATTTTGAGACACTGGAAAATGGTGAGCGCTTTCAGTT
TGAATCTCAGCAAAGTCGCTATAATATTCATGTGCAGGTGCAAAAACTGATTGTGCCACATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAACTCTCGGCCAGTATT
GCCCATGAAATTCGCAACCCCCTAGCTGCCATTGTGCAAGCCAATGATTTATATCTGGACTCGGAAACTGAACAGCAACA
GCTACTCCAGCAGATGATTGGCCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCTATACCGATTCATCTCAATGATTTTATCCCGTTATTTATCCAAGAAGATCTGGCCGATATTCATGAT
CAGATTCAATTTAATATTGATATCCCTTTGGTCATTCAGTTTGATGAAGCACAATTCCGGCAAATCCTCATTAATCTGAT
TCGTAATGCCATTCGTCACAATTCAGCAGATGCAGCCTATATTCAGCTGAATGTGCATCCCTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAGGCCTTATTGTTTAAACCCTTTTTTAGTACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.832

96.929

0.551