Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   V7S31_RS13110 Genome accession   NZ_CP147655
Coordinates   2714814..2715251 (-) Length   145 a.a.
NCBI ID   WP_007408322.1    Uniprot ID   -
Organism   Bacillus velezensis strain M1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2709814..2720251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS13060 sinI 2710198..2710371 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  V7S31_RS13065 sinR 2710405..2710740 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  V7S31_RS13070 - 2710788..2711573 (-) 786 WP_007408329.1 TasA family protein -
  V7S31_RS13075 - 2711638..2712222 (-) 585 WP_007408328.1 signal peptidase I -
  V7S31_RS13080 tapA 2712194..2712865 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  V7S31_RS13085 - 2713124..2713453 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  V7S31_RS13090 - 2713493..2713672 (-) 180 WP_003153093.1 YqzE family protein -
  V7S31_RS13095 comGG 2713729..2714106 (-) 378 WP_039063315.1 competence type IV pilus minor pilin ComGG -
  V7S31_RS13100 comGF 2714107..2714607 (-) 501 WP_258038902.1 competence type IV pilus minor pilin ComGF -
  V7S31_RS13105 comGE 2714516..2714830 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  V7S31_RS13110 comGD 2714814..2715251 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  V7S31_RS13115 comGC 2715241..2715507 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  V7S31_RS13120 comGB 2715554..2716591 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  V7S31_RS13125 comGA 2716578..2717648 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  V7S31_RS13130 - 2717840..2718790 (-) 951 WP_032870601.1 magnesium transporter CorA family protein -
  V7S31_RS13135 - 2718936..2720237 (+) 1302 WP_338816384.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16314.79 Da        Isoelectric Point: 10.2475

>NTDB_id=947871 V7S31_RS13110 WP_007408322.1 2714814..2715251(-) (comGD) [Bacillus velezensis strain M1]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=947871 V7S31_RS13110 WP_007408322.1 2714814..2715251(-) (comGD) [Bacillus velezensis strain M1]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566