Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACG4IS_RS00950 Genome accession   NZ_CP171672
Coordinates   197103..199181 (-) Length   692 a.a.
NCBI ID   WP_000080593.1    Uniprot ID   Q9KNM1
Organism   Vibrio cholerae strain M808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 192103..204181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IS_RS00930 greB 192597..193082 (+) 486 WP_000850496.1 transcription elongation factor GreB -
  ACG4IS_RS00935 ompR 193220..193942 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  ACG4IS_RS00940 envZ 194011..195327 (+) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  ACG4IS_RS00945 - 195352..196758 (-) 1407 WP_000193487.1 uracil-xanthine permease family protein -
  ACG4IS_RS00950 recG 197103..199181 (-) 2079 WP_000080593.1 ATP-dependent DNA helicase RecG Machinery gene
  ACG4IS_RS00955 spoT 199300..201417 (-) 2118 WP_051120452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACG4IS_RS00960 rpoZ 201449..201721 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  ACG4IS_RS00965 gmk 201829..202452 (-) 624 WP_000515790.1 guanylate kinase -
  ACG4IS_RS00970 - 202820..203491 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76933.18 Da        Isoelectric Point: 7.7534

>NTDB_id=947439 ACG4IS_RS00950 WP_000080593.1 197103..199181(-) (recG) [Vibrio cholerae strain M808]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFTPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=947439 ACG4IS_RS00950 WP_000080593.1 197103..199181(-) (recG) [Vibrio cholerae strain M808]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACGGTGCAGGATCTGCTGTTTCATCTTCCACTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACACTGACACTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAAATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTACCCCTGCACAAACGCCCGATGTTGAGCCAAACCTGACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTACGTAATTTGACTGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAGATCATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAATTCGGCTGATCATGGAAGAGCTGCTGGCGCAAAATCTCTCTATGCTCGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTAGCACAGCTTCCCTTTTC
ACCGACTAAGGCGCAGCAGCGCGTGGTTGCCGAAATCGAAGCCGATTTAGCCAAGCCGCACCCAATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTAGCC
TTGATGGCTCCTACCGAGCTACTGGCCGAGCAGCACGCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
CGGCTGGCTCGCGGGTAAGCTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTTGGCACCCATGCTCTGTTTCAAGAGCAAGTGTCGTTTGACCATCTTGCCTTGGTCATTATTGATGAGCAGCATCGC
TTCGGGGTACATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCAAAACAAGGCGCGTACCCGCATCAGCTCATTATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAAAAACAAGCGG
TAATGCAGGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACCACAGTGATTGAAGTGGGCGTGGATGTGCCTAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTAGCTCAACTTCACCAGCTACGCGGCCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTGGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCTGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAGAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAGCGCGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-170)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

DEAD/DEAH box helicase (DEAD)

(271-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.893

97.11

0.494
  recG/mmsA Streptococcus pneumoniae R6

39.227

97.254

0.381
  recG/mmsA Streptococcus pneumoniae R36A

39.227

97.254

0.381
  recG Bacillus subtilis subsp. subtilis str. 168

39.478

94.075

0.371