Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACFVPM_RS29285 Genome accession   NZ_CP171271
Coordinates   6274293..6276368 (+) Length   691 a.a.
NCBI ID   WP_003096624.1    Uniprot ID   A0A0H2ZJ60
Organism   Pseudomonas aeruginosa strain W220606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6269293..6281368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVPM_RS29255 - 6269715..6270095 (+) 381 WP_003096609.1 RidA family protein -
  ACFVPM_RS29260 - 6270150..6270881 (+) 732 WP_003096611.1 hypothetical protein -
  ACFVPM_RS29265 - 6270888..6271508 (-) 621 WP_003096613.1 LysE family translocator -
  ACFVPM_RS29270 - 6271575..6272375 (-) 801 WP_003114367.1 AraC family transcriptional regulator -
  ACFVPM_RS29275 - 6272375..6273226 (-) 852 WP_023518203.1 SDR family oxidoreductase -
  ACFVPM_RS29280 oxyR 6273364..6274296 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  ACFVPM_RS29285 recG 6274293..6276368 (+) 2076 WP_003096624.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFVPM_RS29290 - 6276458..6277867 (+) 1410 WP_023518204.1 HDOD domain-containing protein -
  ACFVPM_RS29295 - 6277939..6278331 (-) 393 WP_003096629.1 hypothetical protein -
  ACFVPM_RS29300 - 6278467..6278739 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  ACFVPM_RS29305 alkT 6278941..6280095 (-) 1155 WP_003114369.1 rubredoxin-NAD(+) reductase AlkT -
  ACFVPM_RS29310 - 6280147..6280314 (-) 168 WP_003098329.1 rubredoxin -
  ACFVPM_RS29315 - 6280498..6280665 (-) 168 WP_003098330.1 rubredoxin -
  ACFVPM_RS29320 - 6280799..6281200 (-) 402 WP_003098332.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76178.88 Da        Isoelectric Point: 7.2591

>NTDB_id=946056 ACFVPM_RS29285 WP_003096624.1 6274293..6276368(+) (recG) [Pseudomonas aeruginosa strain W220606]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=946056 ACFVPM_RS29285 WP_003096624.1 6274293..6276368(+) (recG) [Pseudomonas aeruginosa strain W220606]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGATATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCACG
CGACTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGCTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCACACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTAGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGCACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAAGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAAACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJ60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG/mmsA Streptococcus pneumoniae R6

40.868

96.671

0.395
  recG/mmsA Streptococcus pneumoniae R36A

40.868

96.671

0.395
  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394