Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R9A04_RS03265 Genome accession   NZ_AP028402
Coordinates   630796..632769 (-) Length   657 a.a.
NCBI ID   WP_317729918.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11531     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 625796..637769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A04_RS03235 kdpB 626298..628273 (+) 1976 Protein_626 potassium-transporting ATPase subunit KdpB -
  R9A04_RS03240 (B11531_06380) - 628275..628853 (+) 579 WP_317729912.1 potassium-transporting ATPase subunit C -
  R9A04_RS03245 (B11531_06390) - 629003..629164 (+) 162 WP_317729913.1 hypothetical protein -
  R9A04_RS03250 (B11531_06400) - 629124..630290 (+) 1167 WP_317729915.1 DUF4118 domain-containing protein -
  R9A04_RS03255 (B11531_06410) - 630329..630664 (+) 336 WP_317729916.1 hypothetical protein -
  R9A04_RS03260 (B11531_06420) - 630649..630801 (+) 153 WP_317729917.1 hypothetical protein -
  R9A04_RS03265 (B11531_06430) uvrB 630796..632769 (-) 1974 WP_317729918.1 excinuclease ABC subunit UvrB Machinery gene
  R9A04_RS03270 (B11531_06440) - 632923..633153 (+) 231 WP_002852327.1 hypothetical protein -
  R9A04_RS03275 (B11531_06450) - 633143..633385 (+) 243 WP_002854947.1 hypothetical protein -
  R9A04_RS03280 (B11531_06460) Cj0683 633382..633819 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R9A04_RS03285 (B11531_06470) priA 633801..635654 (+) 1854 WP_002856756.1 primosomal protein N' -
  R9A04_RS03290 cipA 635664..637058 (-) 1395 Protein_637 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75937.48 Da        Isoelectric Point: 6.8371

>NTDB_id=94597 R9A04_RS03265 WP_317729918.1 630796..632769(-) (uvrB) [Campylobacter jejuni strain BCH-11531]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQTIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLAKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=94597 R9A04_RS03265 WP_317729918.1 630796..632769(-) (uvrB) [Campylobacter jejuni strain BCH-11531]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACTTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCTACTCTTATCATGAGTCACAACAAAAGCCTTTGCGCTCAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCGACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCACTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCAGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCGGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTGGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTTATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAACGATAAAAGATATCAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTCATAGTCGATGAAAGTCATGTATCTTTACCTCAATT
TCGTGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAATATCTTTCATCAAATCATGCGTCCTACGGGACTGCTTGATCCTTTAATAGAGTTAAAAGA
TAGCGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACCGTGC
TAACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGTGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTAGACCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACACCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTAAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAGCTTGCCAAAGAGTTAAGAAAGCAAATGCTTGAAGCAGCCAAAGCACTTGAG
TTTGAAAAAGCTGCCGCAATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-246)

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

UvrB/uvrC motif (UVR)

(623-656)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.617

98.63

0.499
  uvrB Streptococcus pneumoniae TIGR4

50.617

98.63

0.499
  uvrB Streptococcus pneumoniae D39

50.617

98.63

0.499

Multiple sequence alignment