Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACF0HW_RS10450 Genome accession   NZ_CP171208
Coordinates   2137601..2139649 (-) Length   682 a.a.
NCBI ID   WP_012117540.1    Uniprot ID   A7Z4K7
Organism   Bacillus amyloliquefaciens strain HN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2132601..2144649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS10420 rncS 2133005..2133754 (-) 750 WP_012117543.1 ribonuclease III -
  ACF0HW_RS10425 acpP 2133893..2134126 (-) 234 WP_003154310.1 acyl carrier protein -
  ACF0HW_RS10430 fabG 2134211..2134951 (-) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACF0HW_RS10435 fabD 2134944..2135897 (-) 954 WP_012117542.1 ACP S-malonyltransferase -
  ACF0HW_RS10440 plsX 2135916..2136914 (-) 999 WP_012117541.1 phosphate acyltransferase PlsX -
  ACF0HW_RS10445 fapR 2136928..2137494 (-) 567 WP_003154320.1 transcription factor FapR -
  ACF0HW_RS10450 recG 2137601..2139649 (-) 2049 WP_012117540.1 ATP-dependent DNA helicase RecG Machinery gene
  ACF0HW_RS10455 sdaAA 2139627..2140529 (-) 903 WP_012117539.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACF0HW_RS10460 sdaAB 2140550..2141212 (-) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACF0HW_RS10465 - 2141355..2143022 (-) 1668 WP_012117538.1 DAK2 domain-containing protein -
  ACF0HW_RS10470 - 2143038..2143400 (-) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  ACF0HW_RS10475 rpmB 2143659..2143847 (+) 189 WP_003154328.1 50S ribosomal protein L28 -
  ACF0HW_RS10480 spoVM 2143925..2144005 (-) 81 WP_003154329.1 stage V sporulation protein SpoVM -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77847.12 Da        Isoelectric Point: 6.7929

>NTDB_id=945700 ACF0HW_RS10450 WP_012117540.1 2137601..2139649(-) (recG) [Bacillus amyloliquefaciens strain HN11]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLAAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYVICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=945700 ACF0HW_RS10450 WP_012117540.1 2137601..2139649(-) (recG) [Bacillus amyloliquefaciens strain HN11]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGATGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCTGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTGAGAATCCGCTACAAGCTGCCTGA
TTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTACG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCGCCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACGACCGCACAGACGCGTGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTATGCTGCGATTTTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTTTGGCCGAACAG
CATGCGGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTCAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGCCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATTCCGAGAACGCTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATGTTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTTCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGATTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCAGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCGGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCAGCCAATCTGGTGTCTTCAGAGGCGTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTGGAAGGGGAGAAGTTAAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

DEAD/DEAH box helicase (DEAD)

(261-415)

RecG wedge domain (RecG_wedge)

(11-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.589

100

0.896
  recG/mmsA Streptococcus pneumoniae R6

50.225

97.801

0.491
  recG/mmsA Streptococcus pneumoniae R36A

50.225

97.801

0.491
  recG Neisseria meningitidis strain C311

39.357

95.748

0.377