Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   ACF3OJ_RS04740 Genome accession   NZ_CP171111
Coordinates   927727..929787 (+) Length   686 a.a.
NCBI ID   WP_392406632.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain WGS1530     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 922727..934787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OJ_RS04700 (ACF3OJ_04700) - 923004..923312 (+) 309 WP_048714518.1 H-NS family nucleoid-associated regulatory protein -
  ACF3OJ_RS04705 (ACF3OJ_04705) - 923380..923787 (+) 408 WP_392406627.1 HIT family protein -
  ACF3OJ_RS04710 (ACF3OJ_04710) folD 923802..924674 (+) 873 WP_392406629.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ACF3OJ_RS04715 (ACF3OJ_04715) - 924715..925242 (+) 528 WP_004139979.1 flavodoxin -
  ACF3OJ_RS04720 (ACF3OJ_04720) - 925302..925499 (+) 198 WP_004139980.1 DUF1737 domain-containing protein -
  ACF3OJ_RS04725 (ACF3OJ_04725) - 925499..926112 (+) 614 Protein_920 sugar O-acetyltransferase -
  ACF3OJ_RS04730 (ACF3OJ_04730) - 926124..926612 (+) 489 WP_392406630.1 DUF3828 domain-containing protein -
  ACF3OJ_RS04735 (ACF3OJ_04735) lpxK 926654..927634 (+) 981 WP_392406631.1 tetraacyldisaccharide 4'-kinase -
  ACF3OJ_RS04740 (ACF3OJ_04740) recG 927727..929787 (+) 2061 WP_392406632.1 ATP-dependent DNA helicase RecG Machinery gene
  ACF3OJ_RS04745 (ACF3OJ_04745) - 929861..931255 (+) 1395 WP_392406634.1 hypothetical protein -
  ACF3OJ_RS04750 (ACF3OJ_04750) - 931252..931833 (+) 582 WP_392406636.1 NAD(P)H-dependent oxidoreductase -
  ACF3OJ_RS04755 (ACF3OJ_04755) - 931874..932728 (+) 855 WP_392406638.1 factor H binding protein domain-containing protein -
  ACF3OJ_RS04760 (ACF3OJ_04760) - 932738..933238 (+) 501 WP_392406640.1 hypothetical protein -
  ACF3OJ_RS04765 (ACF3OJ_04765) mutY 933247..934272 (+) 1026 WP_314886734.1 A/G-specific adenine glycosylase -

Sequence


Protein


Download         Length: 686 a.a.        Molecular weight: 75650.00 Da        Isoelectric Point: 7.9937

>NTDB_id=945589 ACF3OJ_RS04740 WP_392406632.1 927727..929787(+) (recG) [Cardiobacterium hominis strain WGS1530]
MPLNQPLSAISSHGDKTAELLARCGVETLRDLLTHLPLRYEDRSHITPIAALRDGATVQIHGEVLHADLIQRRKRMLHVT
LRDAAGDYCKLVYFNFYPSQQKAFAPGRRGLFYGKAVWTMQGYQIHHPEVQWLADGETPHLSAQLHPVYPTVKGLGQTRW
HDLIRRALAHALPQLPADDPLTAMGYCPLPAALTTLHQPDESTAPDALLERNHPARRRLIIEELIAHQLSIQNARQRLRE
QRATALPAEPPLLREFRAALPYTLTAAQSRVCAEIAADLAQATPMLRLVQGDVGSGKTVVALSACLQAIAAGQQAVFMVP
TELLAEQHAANIRRLLGALPVRVAVLTSKMPAADKRACLQAIADGSADLVIGTHAVFQEQVRYARLALVVIDEQHRFGVH
QRLQLQDKTAPGVSVHQLVLTATPIPRTLAMSHYGELDCSIIDALPAGRQPIQTSVVSNQKRDAVIARVGENCRAGRQAY
WVCPLIEESDTLECENAEATAAQLQMMLPDIRVALLHGRMTNEQRQATMSAFVAGEAQLLVATTVIEVGVDVANATLMII
ENAERFGLAQLHQLRGRVGRGSAQSYCLLMYQPPLGETAQRRLRIMRETTDGFRIAEEDLAIRGAGELLGTRQTGEASFR
VARLPRDGDLLAETERLTRTLRAEHPDYCAVLLARWTASREKYLNA

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=945589 ACF3OJ_RS04740 WP_392406632.1 927727..929787(+) (recG) [Cardiobacterium hominis strain WGS1530]
ATGCCCCTCAACCAACCGCTCTCCGCCATCTCCAGCCACGGCGACAAAACCGCCGAACTCCTCGCCCGCTGCGGCGTGGA
AACCCTGCGCGATTTACTCACCCACCTGCCGCTGCGCTACGAAGACCGCTCGCACATCACCCCCATCGCCGCCCTGCGCG
ACGGCGCCACCGTACAAATCCACGGCGAAGTGCTGCACGCCGACCTCATCCAGCGGCGCAAGCGGATGCTGCACGTGACC
CTGCGCGACGCCGCCGGCGATTACTGCAAACTCGTGTACTTCAACTTCTACCCCAGCCAGCAAAAAGCCTTCGCCCCCGG
ACGGCGTGGCCTCTTTTACGGCAAGGCGGTGTGGACGATGCAGGGCTACCAAATCCACCACCCCGAAGTGCAATGGCTGG
CAGACGGCGAAACGCCACACCTCTCCGCGCAACTCCACCCGGTCTATCCCACCGTCAAAGGCCTGGGGCAGACGCGCTGG
CACGACCTCATCCGCCGCGCCCTCGCCCACGCCCTGCCGCAACTGCCCGCAGACGACCCGCTCACCGCAATGGGTTATTG
CCCGCTGCCCGCCGCGCTCACCACCCTGCACCAGCCGGACGAAAGCACCGCGCCCGATGCGCTACTTGAGCGCAACCATC
CGGCGCGCCGCCGCCTCATCATCGAAGAACTCATCGCCCACCAACTCTCCATCCAGAACGCCCGCCAGCGTCTGCGCGAA
CAGCGTGCCACCGCGCTACCCGCCGAACCGCCGCTGCTACGCGAGTTTCGCGCCGCCTTGCCCTATACGCTGACCGCCGC
ACAAAGCCGCGTCTGTGCGGAAATCGCCGCCGATCTCGCGCAAGCGACGCCGATGCTGCGCCTGGTGCAAGGCGACGTCG
GCAGCGGCAAAACCGTGGTTGCGCTCTCGGCCTGCCTGCAAGCCATCGCCGCCGGACAACAGGCGGTGTTCATGGTGCCG
ACCGAACTGCTCGCCGAACAGCACGCCGCCAACATCCGCCGCCTGCTCGGCGCGCTACCGGTGCGCGTTGCCGTCCTCAC
CAGCAAAATGCCCGCCGCCGACAAACGCGCCTGCCTGCAAGCCATTGCCGACGGCAGCGCCGACCTCGTCATCGGCACGC
ATGCCGTCTTCCAGGAACAAGTCCGCTACGCCCGCCTCGCCCTCGTCGTCATCGACGAACAGCACCGCTTCGGCGTGCAC
CAGCGCCTGCAACTACAAGACAAAACCGCGCCTGGCGTCAGCGTGCACCAACTCGTCCTGACCGCCACCCCCATCCCGAG
AACGCTGGCGATGAGCCACTACGGCGAACTCGACTGCTCCATCATCGACGCCCTGCCCGCCGGGCGCCAGCCCATCCAGA
CCAGCGTCGTCTCCAACCAAAAACGCGACGCCGTCATCGCCCGCGTCGGCGAAAACTGCCGCGCCGGACGGCAAGCCTAC
TGGGTCTGCCCGCTCATCGAAGAATCCGACACCCTCGAATGCGAAAACGCCGAAGCAACTGCGGCACAACTACAAATGAT
GCTGCCGGACATCCGCGTCGCCCTGCTGCATGGCCGCATGACCAACGAACAGCGGCAGGCGACCATGAGCGCCTTCGTCG
CCGGCGAGGCACAACTGCTGGTCGCCACCACCGTCATCGAAGTCGGCGTGGACGTCGCCAACGCGACCCTGATGATAATA
GAGAACGCCGAACGCTTTGGCCTCGCACAACTGCACCAACTGCGCGGCCGCGTCGGTCGGGGCAGCGCCCAATCCTACTG
CCTGCTGATGTACCAACCGCCGCTGGGCGAAACCGCACAACGCCGCCTGCGCATCATGCGCGAAACCACCGACGGCTTCC
GCATCGCCGAAGAAGACCTCGCCATCCGCGGCGCGGGCGAACTGCTCGGCACACGGCAGACCGGCGAGGCCAGCTTCCGC
GTTGCCCGCCTGCCGCGCGACGGCGACCTGCTCGCGGAAACCGAACGCCTCACCCGCACCCTGCGCGCAGAACATCCCGA
CTACTGCGCCGTCCTGCTCGCACGCTGGACAGCCTCGCGCGAAAAATACCTCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

45.562

98.542

0.449

  recG/mmsA Streptococcus pneumoniae R6

39.049

100

0.395

  recG/mmsA Streptococcus pneumoniae R36A

39.049

100

0.395

  recG Bacillus subtilis subsp. subtilis str. 168

40.122

95.918

0.385