Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   V9L13_RS16435 Genome accession   NZ_CP146986
Coordinates   3643083..3644450 (+) Length   455 a.a.
NCBI ID   WP_338800035.1    Uniprot ID   -
Organism   Pseudomonas sp. RSB 5.4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638083..3649450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L13_RS16410 (V9L13_16410) pgeF 3638320..3639042 (-) 723 WP_338800033.1 peptidoglycan editing factor PgeF -
  V9L13_RS16415 (V9L13_16415) rluD 3639039..3640001 (-) 963 WP_003228314.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V9L13_RS16420 (V9L13_16420) - 3640153..3641172 (+) 1020 WP_003228317.1 outer membrane protein assembly factor BamD -
  V9L13_RS16425 (V9L13_16425) - 3641299..3641532 (+) 234 WP_045122641.1 PP0621 family protein -
  V9L13_RS16430 (V9L13_16430) pilS 3641522..3643108 (+) 1587 WP_338802878.1 ATP-binding protein Regulator
  V9L13_RS16435 (V9L13_16435) pilR 3643083..3644450 (+) 1368 WP_338800035.1 sigma-54 dependent transcriptional regulator Regulator
  V9L13_RS16440 (V9L13_16440) thiO 3644565..3645665 (-) 1101 WP_338800036.1 glycine oxidase ThiO -
  V9L13_RS16445 (V9L13_16445) - 3645724..3646125 (-) 402 WP_003228325.1 type IV pilin protein -
  V9L13_RS16450 (V9L13_16450) - 3646141..3649224 (-) 3084 WP_338800037.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50507.86 Da        Isoelectric Point: 6.4392

>NTDB_id=945377 V9L13_RS16435 WP_338800035.1 3643083..3644450(+) (pilR) [Pseudomonas sp. RSB 5.4]
MLTDGNKVEHEPTAKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQTLLHNNTFDLCLTDMRLPDGTGLDLVQHIQ
QRYPQLPVAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGGSVTSIDRRLLGDSPPMHNLRKQID
KLARSQAPVYISGESGSGKELVARLIHEQGPRAGKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGT
LFLDEVADLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPSLRERR
DDIEVLAAHMLQRLAAGSGRAAARLHPQALEALKSYRFPGNVRELENVLERAHTLCENQLIEAADLRLSEGNCTVEGGIA
DLTQIDNLEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=945377 V9L13_RS16435 WP_338800035.1 3643083..3644450(+) (pilR) [Pseudomonas sp. RSB 5.4]
TTGCTCACGGACGGAAACAAAGTTGAACACGAGCCCACGGCAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGA
ACTCCTGGAAATCACCCTGGGACGGATGAAACTCGACACCTTCAGCGCGCGCAATCTCGGCGAAGCCCAGACGTTGTTGC
ACAACAACACCTTCGACCTGTGCCTGACCGACATGCGCCTGCCCGACGGCACGGGGCTGGACCTCGTGCAGCACATCCAG
CAACGTTATCCACAACTGCCGGTGGCGATGATCACCGCGTACGGCAGTCTGGAAACGGCGATCAACGCCTTGAAAGCCGG
GGCCTTCGACTTCCTGACCAAGCCGGTTGATCTGACGCGCCTGCGCGAACTGGTCAGCACTGCGTTGCGCATGCCGGCAG
CCGGAGGCAGCGTCACCTCGATCGACCGGCGCCTGCTCGGTGACTCACCACCGATGCACAATCTGCGCAAACAGATCGAC
AAACTGGCGCGCAGTCAGGCACCGGTCTACATCAGCGGAGAATCGGGCAGCGGCAAAGAACTGGTCGCGCGGCTGATCCA
CGAACAGGGACCACGCGCCGGCAAGCCGTTCGTGCCGGTCAATTGCGGGGCGATTCCGTCGGAGCTGATGGAAAGCGAAT
TTTTCGGTCATCGCAAAGGCAGCTTCACTGGCGCAGTGGAGGACAAACCTGGGCTGTTCCAGGCCGCACACGGCGGCACC
CTGTTTCTCGACGAAGTGGCGGACCTGCCGCTGTCGATGCAGGTGAAATTGCTGCGGGCGATTCAGGAGAAAGCCGTGCG
CAGCGTCGGCGGTCAGCAGGAAACGGTGGTCGATGTGCGCATTCTTTGCGCCACCCACAAGGATCTCGACGCCGAGGTCG
CCGCCGGGCGCTTTCGCCAGGACCTGTATTACCGCTTGAACGTGATCGAACTGCGTGTGCCATCCCTGCGCGAACGGCGC
GATGACATCGAGGTGCTGGCGGCGCACATGCTCCAGCGTCTGGCGGCAGGCAGCGGCCGCGCGGCGGCTCGTTTGCACCC
GCAGGCGCTTGAGGCGCTGAAGAGTTACCGCTTTCCGGGGAATGTTCGAGAGCTGGAAAACGTCCTTGAACGGGCGCACA
CGCTGTGTGAAAACCAGTTGATCGAGGCCGCAGATCTGCGTCTCAGCGAAGGTAATTGCACGGTCGAGGGCGGTATTGCC
GACCTGACGCAGATCGATAACCTGGAGGATTATCTGGAGAACGTCGAGCGCAAGCTGATCCTGCAGGCGCTGGAGGAAAC
GCGCTGGAATCGTACGGCGGCGGCGCAGCGGTTGAGTCTGTCGTTTCGCTCGATGCGCTACAGGCTGAAGAAACTCGGTC
TGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(146-311)

Bacterial regulatory protein, Fis family (HTH_8)

(412-452)

Response regulator receiver domain (Response_reg)

(16-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.458

96.923

0.76
  pilR Acinetobacter baumannii strain A118

48.584

100

0.49