Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   V9L13_RS16430 Genome accession   NZ_CP146986
Coordinates   3641522..3643108 (+) Length   528 a.a.
NCBI ID   WP_338802878.1    Uniprot ID   -
Organism   Pseudomonas sp. RSB 5.4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3636522..3648108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L13_RS16410 (V9L13_16410) pgeF 3638320..3639042 (-) 723 WP_338800033.1 peptidoglycan editing factor PgeF -
  V9L13_RS16415 (V9L13_16415) rluD 3639039..3640001 (-) 963 WP_003228314.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V9L13_RS16420 (V9L13_16420) - 3640153..3641172 (+) 1020 WP_003228317.1 outer membrane protein assembly factor BamD -
  V9L13_RS16425 (V9L13_16425) - 3641299..3641532 (+) 234 WP_045122641.1 PP0621 family protein -
  V9L13_RS16430 (V9L13_16430) pilS 3641522..3643108 (+) 1587 WP_338802878.1 ATP-binding protein Regulator
  V9L13_RS16435 (V9L13_16435) pilR 3643083..3644450 (+) 1368 WP_338800035.1 sigma-54 dependent transcriptional regulator Regulator
  V9L13_RS16440 (V9L13_16440) thiO 3644565..3645665 (-) 1101 WP_338800036.1 glycine oxidase ThiO -
  V9L13_RS16445 (V9L13_16445) - 3645724..3646125 (-) 402 WP_003228325.1 type IV pilin protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 58378.14 Da        Isoelectric Point: 6.6342

>NTDB_id=945376 V9L13_RS16430 WP_338802878.1 3641522..3643108(+) (pilS) [Pseudomonas sp. RSB 5.4]
MIAEANADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDELLRSGSWLYLVLNILLVVFLENTRRPAQLFT
LALVDVLLLCGLFYAAGGVASAIGNLLIVSVAIANTLLRRRIGLLIAAISALGIIGSSFLLSFNHPLSANNYLQAGTLGA
LCFAASLLVQGLVRRLEVSENLAEKRASEVIGLEALNALILQRMRTGILVLDDQCRVQLANHSAKSLLAQSHLEGHLIDD
YSPALVERLQLWLSNPTLRPQSLKIPGNGLELQPNFIALAQSPNQQTLVFLEDLAQVAQQAQQLKLAALGRLTAGISHEI
RNPLGAISHAAQLLGESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLERFVCESREQATERQ
SIHLRINSGDFITLMDPDQLTQILDNLLRNGWRHSALLHEQAEVWLALFIDPDSQLAVLEVQDNGPGVPPDQQADLFEPF
FTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=945376 V9L13_RS16430 WP_338802878.1 3641522..3643108(+) (pilS) [Pseudomonas sp. RSB 5.4]
GTGATCGCTGAGGCCAACGCCGACAGTAAACAGGCGCAGCGCCTGCTGCGCCTCTATCATCTCTACCGTTTAAGCGTCGG
CATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCGACGACGAACTGCTGCGCAGCG
GCAGCTGGTTGTATCTGGTGCTGAACATTCTGCTGGTGGTGTTCCTGGAGAACACCCGCCGCCCGGCGCAGCTGTTCACC
CTGGCGCTGGTCGATGTGCTCTTGCTGTGCGGCCTGTTCTACGCGGCGGGTGGCGTGGCCAGCGCCATCGGTAACTTGCT
GATTGTCTCGGTGGCGATCGCCAACACCCTGCTGCGCCGACGCATCGGCTTGCTGATAGCCGCCATCAGCGCCCTCGGTA
TCATTGGTTCAAGTTTCCTGCTGAGCTTCAACCACCCCCTGAGCGCCAACAATTACCTGCAAGCCGGAACCCTGGGCGCC
TTGTGTTTTGCCGCTTCACTGCTGGTACAGGGTCTGGTCAGGCGCCTGGAAGTCAGCGAAAACCTCGCCGAAAAGCGCGC
CAGCGAAGTGATCGGCCTCGAAGCCCTCAACGCCCTGATTCTGCAGCGTATGCGCACCGGCATCCTGGTGCTCGATGACC
AGTGCCGGGTGCAACTGGCCAATCACAGCGCGAAAAGCCTGCTGGCGCAGTCGCACCTTGAGGGGCATTTGATCGATGAC
TACTCGCCGGCACTGGTCGAGCGCCTGCAACTATGGCTGAGCAACCCGACCCTACGCCCGCAGAGCCTGAAGATTCCCGG
CAACGGCCTGGAACTGCAACCGAACTTCATCGCCCTCGCACAGAGTCCGAACCAGCAAACCCTGGTGTTTCTCGAAGACC
TTGCACAAGTCGCCCAGCAAGCCCAGCAACTCAAGCTCGCCGCGCTCGGGCGCCTGACCGCCGGCATCTCCCATGAAATC
CGTAATCCGCTGGGCGCCATCAGTCACGCCGCGCAGCTATTGGGTGAGTCCGAGGAACTCGATGGCGCGGATCGGCGTCT
GACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCGCGCCGCCAGCAGA
GCGCTCCGCAACGCCTGGATCTCAAACCGTGGCTGGAACGCTTCGTCTGCGAGAGCCGCGAACAGGCGACTGAGCGCCAG
TCGATTCATTTGCGGATCAATTCCGGGGACTTCATCACATTGATGGACCCCGACCAGCTCACGCAAATTCTCGACAATCT
GTTACGCAACGGCTGGCGGCACAGCGCCCTGCTGCACGAGCAGGCCGAGGTCTGGCTGGCACTGTTCATCGACCCCGACA
GCCAGCTGGCGGTGCTCGAAGTGCAGGACAACGGCCCCGGTGTACCACCCGATCAGCAGGCCGATCTGTTCGAGCCGTTC
TTCACCACCAGTAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCTAGA
CTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.577

98.485

0.597