Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   ACFXAC_RS07825 Genome accession   NZ_CP170720
Coordinates   1571031..1573079 (+) Length   682 a.a.
NCBI ID   WP_391483839.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1566031..1578079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS07795 (ACFXAC_07795) spoVM 1566675..1566755 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  ACFXAC_RS07800 (ACFXAC_07800) rpmB 1566833..1567021 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  ACFXAC_RS07805 (ACFXAC_07805) - 1567280..1567642 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  ACFXAC_RS07810 (ACFXAC_07810) - 1567658..1569325 (+) 1668 WP_022553356.1 DAK2 domain-containing protein -
  ACFXAC_RS07815 (ACFXAC_07815) sdaAB 1569468..1570130 (+) 663 WP_017417764.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACFXAC_RS07820 (ACFXAC_07820) sdaAA 1570151..1571053 (+) 903 WP_003154324.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACFXAC_RS07825 (ACFXAC_07825) recG 1571031..1573079 (+) 2049 WP_391483839.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFXAC_RS07830 (ACFXAC_07830) fapR 1573186..1573752 (+) 567 WP_003154320.1 transcription factor FapR -
  ACFXAC_RS07835 (ACFXAC_07835) plsX 1573766..1574764 (+) 999 WP_053573432.1 phosphate acyltransferase PlsX -
  ACFXAC_RS07840 (ACFXAC_07840) fabD 1574783..1575736 (+) 954 WP_007409759.1 ACP S-malonyltransferase -
  ACFXAC_RS07845 (ACFXAC_07845) fabG 1575729..1576469 (+) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACFXAC_RS07850 (ACFXAC_07850) acpP 1576554..1576787 (+) 234 WP_003154310.1 acyl carrier protein -
  ACFXAC_RS07855 (ACFXAC_07855) rncS 1576926..1577675 (+) 750 WP_007409760.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 77881.14 Da        Isoelectric Point: 6.7928

>NTDB_id=945331 ACFXAC_RS07825 WP_391483839.1 1571031..1573079(+) (recG) [Bacillus amyloliquefaciens strain JP5006]
MTHHQQTSIADIKGIGPETEKTFHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLAAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=945331 ACFXAC_RS07825 WP_391483839.1 1571031..1573079(+) (recG) [Bacillus amyloliquefaciens strain JP5006]
GTGACACACCATCAGCAAACTAGTATAGCGGATATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTTCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCTGATCCGCTTCCTGAAAAATTGAGAATCCGCTACAAGCTTCCTGA
CTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTACG
AAGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCGGCTGAAAAGCTCGCCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACAACCGCACAGACGCGTGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTTTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTCAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGCCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATTCCGAGAACGCTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGGTTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCAGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCGGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCGTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTGGAAGGGGAGAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.589

100

0.896

  recG/mmsA Streptococcus pneumoniae R6

50.075

97.801

0.49

  recG/mmsA Streptococcus pneumoniae R36A

50.075

97.801

0.49

  recG Neisseria meningitidis strain C311

38.831

97.801

0.38