Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   WAA16_RS15015 Genome accession   NZ_CP146984
Coordinates   2904281..2904421 (-) Length   46 a.a.
NCBI ID   WP_003213123.1    Uniprot ID   A0A5K1N966
Organism   Bacillus pumilus strain S9     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2899281..2909421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS14990 (WAA16_14990) - 2899547..2899936 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  WAA16_RS14995 (WAA16_14995) comA 2899960..2900601 (-) 642 WP_060597210.1 response regulator transcription factor Regulator
  WAA16_RS15000 (WAA16_15000) comP 2900682..2902994 (-) 2313 WP_106072125.1 ATP-binding protein Regulator
  WAA16_RS15005 (WAA16_15005) comX 2903048..2903218 (-) 171 WP_151275709.1 competence pheromone ComX -
  WAA16_RS15010 (WAA16_15010) - 2903215..2904129 (-) 915 WP_260336302.1 polyprenyl synthetase family protein -
  WAA16_RS15015 (WAA16_15015) degQ 2904281..2904421 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  WAA16_RS15020 (WAA16_15020) - 2904927..2905280 (+) 354 WP_060597216.1 hypothetical protein -
  WAA16_RS15025 (WAA16_15025) - 2905314..2906540 (-) 1227 WP_060597217.1 HDOD domain-containing protein -
  WAA16_RS15030 (WAA16_15030) - 2906679..2908148 (-) 1470 WP_034659831.1 nicotinate phosphoribosyltransferase -
  WAA16_RS15035 (WAA16_15035) - 2908166..2908717 (-) 552 WP_127687105.1 isochorismatase family cysteine hydrolase -
  WAA16_RS15040 (WAA16_15040) - 2908778..2909185 (-) 408 WP_060597219.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5677.42 Da        Isoelectric Point: 4.6828

>NTDB_id=945320 WAA16_RS15015 WP_003213123.1 2904281..2904421(-) (degQ) [Bacillus pumilus strain S9]
MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEYVKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=945320 WAA16_RS15015 WP_003213123.1 2904281..2904421(-) (degQ) [Bacillus pumilus strain S9]
ATGGAAAAGTATGAAATCGAAGAACTTAAACAATTATTATGGAAACTTGAAAACGAAATTAGAGAAACAACGGCTTCTCT
TCATAACATTAACAAAAGCATTGATCAATACGACAAATATGAATATGTGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N966

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.696