Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WAA16_RS14995 Genome accession   NZ_CP146984
Coordinates   2899960..2900601 (-) Length   213 a.a.
NCBI ID   WP_060597210.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2894960..2905601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS14960 (WAA16_14960) - 2896071..2896502 (+) 432 WP_106043633.1 Na(+)/H(+) antiporter subunit B -
  WAA16_RS14965 (WAA16_14965) - 2896502..2896843 (+) 342 WP_066030469.1 Na(+)/H(+) antiporter subunit C -
  WAA16_RS14970 (WAA16_14970) - 2896836..2898314 (+) 1479 WP_066030468.1 Na+/H+ antiporter subunit D -
  WAA16_RS14975 (WAA16_14975) - 2898321..2898800 (+) 480 WP_066030467.1 Na+/H+ antiporter subunit E -
  WAA16_RS14980 (WAA16_14980) - 2898800..2899081 (+) 282 WP_106030437.1 Na(+)/H(+) antiporter subunit F1 -
  WAA16_RS14985 (WAA16_14985) mnhG 2899065..2899439 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  WAA16_RS14990 (WAA16_14990) - 2899547..2899936 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  WAA16_RS14995 (WAA16_14995) comA 2899960..2900601 (-) 642 WP_060597210.1 response regulator transcription factor Regulator
  WAA16_RS15000 (WAA16_15000) comP 2900682..2902994 (-) 2313 WP_106072125.1 ATP-binding protein Regulator
  WAA16_RS15005 (WAA16_15005) comX 2903048..2903218 (-) 171 WP_151275709.1 competence pheromone ComX -
  WAA16_RS15010 (WAA16_15010) - 2903215..2904129 (-) 915 WP_260336302.1 polyprenyl synthetase family protein -
  WAA16_RS15015 (WAA16_15015) degQ 2904281..2904421 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  WAA16_RS15020 (WAA16_15020) - 2904927..2905280 (+) 354 WP_060597216.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24139.58 Da        Isoelectric Point: 4.5688

>NTDB_id=945318 WAA16_RS14995 WP_060597210.1 2899960..2900601(-) (comA) [Bacillus pumilus strain S9]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQLVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=945318 WAA16_RS14995 WP_060597210.1 2899960..2900601(-) (comA) [Bacillus pumilus strain S9]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACTAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718