Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   WAA16_RS15000 Genome accession   NZ_CP146984
Coordinates   2900682..2902994 (-) Length   770 a.a.
NCBI ID   WP_106072125.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 2895682..2907994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS14960 (WAA16_14960) - 2896071..2896502 (+) 432 WP_106043633.1 Na(+)/H(+) antiporter subunit B -
  WAA16_RS14965 (WAA16_14965) - 2896502..2896843 (+) 342 WP_066030469.1 Na(+)/H(+) antiporter subunit C -
  WAA16_RS14970 (WAA16_14970) - 2896836..2898314 (+) 1479 WP_066030468.1 Na+/H+ antiporter subunit D -
  WAA16_RS14975 (WAA16_14975) - 2898321..2898800 (+) 480 WP_066030467.1 Na+/H+ antiporter subunit E -
  WAA16_RS14980 (WAA16_14980) - 2898800..2899081 (+) 282 WP_106030437.1 Na(+)/H(+) antiporter subunit F1 -
  WAA16_RS14985 (WAA16_14985) mnhG 2899065..2899439 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  WAA16_RS14990 (WAA16_14990) - 2899547..2899936 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  WAA16_RS14995 (WAA16_14995) comA 2899960..2900601 (-) 642 WP_060597210.1 response regulator transcription factor Regulator
  WAA16_RS15000 (WAA16_15000) comP 2900682..2902994 (-) 2313 WP_106072125.1 ATP-binding protein Regulator
  WAA16_RS15005 (WAA16_15005) comX 2903048..2903218 (-) 171 WP_151275709.1 competence pheromone ComX -
  WAA16_RS15010 (WAA16_15010) - 2903215..2904129 (-) 915 WP_260336302.1 polyprenyl synthetase family protein -
  WAA16_RS15015 (WAA16_15015) degQ 2904281..2904421 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  WAA16_RS15020 (WAA16_15020) - 2904927..2905280 (+) 354 WP_060597216.1 hypothetical protein -
  WAA16_RS15025 (WAA16_15025) - 2905314..2906540 (-) 1227 WP_060597217.1 HDOD domain-containing protein -

Sequence


Protein


Download         Length: 770 a.a.        Molecular weight: 89480.96 Da        Isoelectric Point: 7.0967

>NTDB_id=945319 WAA16_RS15000 WP_106072125.1 2900682..2902994(-) (comP) [Bacillus pumilus strain S9]
MKITYTKLSAFLVFLSFLFVIYVSYIYVFDIFNGARVAENKNGQAEVVKVEYLSLAYTSGLEEGDIILKINGEPANNKDH
LINGELRNVQRIDIQRGNQMITLKNKTLIGQESLFVYLIPLVLYSICLFCIFFIIRINKETQRKSAFLLVLFLLTICIGY
LSAGTSGIGERFSHYVIVFCLSSVFIFYIHFIYQYFKEFNLHITNQKTIRLLYSLPVINLLIELAVPIDSAIARYMPSLN
LLFFFASIIMSFKVIINGMRKYKETEQGSVLKFFVMINIIAFCPFIFLFAIPYVLFRIYVVDPFFLTSFVLLIPFSLVYQ
FMTNKLYNMDFLISRLRYYGFLAITPTIFVVVTFYILQKPEDLKYTLKLALITYALMLAVFYFKEILDFRFRLKRFSEKH
NYQDSVFKFTQLIREASSLHQVLYHLKYTILEVLVVNKAFVLEVKPDGQIEEIDESSGDSNLWKEYVDQFQDILGEVGKI
IELDKGFMMKIGERGGHSFMICCLSNLQTPKLTRDEISWLKTLAFYTSVSLENVVKIEELMEHLEDLKQREANPAWLKKV
MFAMEEKQRSDLARDLHDSVLQDLISLKRQSEMFLTNFQNDQCPTSIEQSLISWNEQMSKVIQTTRETCHELRPQLLYDL
GLVKAMSKLTSQIQEEAPFHIRLNTTRFDKELDIDIDSQLNIYRIVQELLSNALKHSQASQVLVMLICIKDQVVLHYEDD
GVGFDASHLDQHTMSMGLSGIRERVKALNGKLHIHTAPEKGLKVKIEMEL

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=945319 WAA16_RS15000 WP_106072125.1 2900682..2902994(-) (comP) [Bacillus pumilus strain S9]
ATGAAGATAACTTATACGAAACTATCTGCTTTTTTGGTTTTTCTGTCTTTTTTATTTGTGATTTATGTTTCATATATTTA
TGTATTTGATATTTTTAATGGAGCACGTGTAGCGGAGAACAAGAACGGTCAAGCAGAAGTTGTCAAAGTTGAATATCTTT
CTTTAGCCTACACATCAGGATTAGAAGAAGGAGATATTATACTTAAAATCAATGGGGAACCTGCTAACAACAAAGATCAT
TTGATCAATGGTGAGCTTAGGAATGTGCAAAGAATTGATATTCAAAGAGGCAACCAAATGATCACCCTTAAAAATAAGAC
ATTGATTGGTCAAGAAAGTTTATTTGTCTATTTAATTCCTCTCGTCCTGTATTCAATATGTTTATTTTGTATCTTCTTTA
TCATTAGAATTAACAAAGAGACCCAACGGAAATCAGCATTTCTTTTAGTTTTATTTTTATTAACGATTTGTATCGGGTAT
CTTAGTGCAGGTACTTCAGGTATTGGTGAAAGATTTAGCCATTATGTGATCGTATTTTGTTTATCAAGTGTATTTATCTT
TTATATTCATTTCATTTATCAGTATTTTAAAGAGTTTAACTTGCATATAACAAATCAAAAAACAATTCGCCTTTTATATA
GTCTTCCAGTAATTAATCTATTGATAGAGCTAGCAGTTCCAATAGATTCAGCGATAGCAAGATACATGCCAAGTTTAAAT
CTTTTATTCTTTTTCGCTTCTATTATCATGTCATTCAAAGTGATTATCAATGGAATGCGGAAATATAAAGAGACAGAGCA
GGGGTCTGTTTTAAAGTTTTTTGTCATGATTAATATCATAGCATTCTGTCCATTTATATTTTTATTTGCAATACCATATG
TTTTGTTTCGTATTTATGTGGTAGATCCCTTTTTCTTGACTTCTTTTGTCTTGCTTATTCCTTTTTCTCTAGTGTACCAA
TTCATGACGAACAAACTTTACAATATGGATTTTTTGATTAGCAGACTGAGGTACTATGGCTTTCTAGCCATCACACCGAC
CATTTTTGTTGTTGTCACGTTTTATATTCTGCAAAAACCAGAAGATTTGAAGTACACACTGAAGCTCGCATTAATCACCT
ACGCGCTCATGCTGGCTGTTTTCTATTTCAAAGAAATTCTAGATTTCCGTTTTCGTCTGAAGCGTTTTTCAGAGAAGCAT
AATTACCAGGACAGCGTGTTTAAATTTACGCAGCTCATTCGTGAGGCGTCATCACTTCATCAAGTGCTGTATCATTTGAA
ATACACCATTTTAGAAGTGCTTGTTGTTAATAAAGCCTTTGTGCTTGAAGTGAAGCCAGATGGACAAATTGAAGAGATTG
ATGAATCTTCAGGTGATAGCAATCTATGGAAAGAGTATGTGGATCAATTTCAGGATATTTTAGGGGAAGTCGGGAAAATC
ATTGAGCTTGATAAAGGGTTTATGATGAAAATTGGCGAGCGGGGCGGTCACTCGTTTATGATTTGCTGTTTATCCAATTT
ACAGACACCGAAATTGACGCGTGATGAGATTTCTTGGCTGAAAACATTGGCTTTTTACACAAGTGTCAGTTTAGAAAATG
TCGTCAAGATCGAAGAATTGATGGAGCATCTTGAAGATTTGAAGCAGCGTGAAGCGAACCCTGCTTGGCTGAAAAAAGTC
ATGTTTGCGATGGAAGAAAAGCAGCGCTCCGATTTAGCGAGGGATCTTCATGATTCCGTGCTGCAGGATTTGATATCGCT
GAAAAGACAGTCAGAGATGTTTTTAACGAATTTCCAAAACGATCAATGCCCAACGTCTATTGAACAATCGCTTATTTCAT
GGAATGAACAAATGTCTAAGGTGATTCAAACCACGAGAGAAACATGTCATGAACTTCGGCCGCAGCTGCTGTACGATTTA
GGTTTAGTCAAGGCGATGTCGAAGCTGACTTCTCAAATCCAGGAGGAAGCACCGTTTCATATCCGGCTGAATACGACTCG
CTTTGATAAGGAGCTGGACATTGATATTGACTCCCAGCTCAATATTTACCGGATTGTTCAGGAGCTGTTATCCAATGCCT
TGAAACATTCTCAAGCCAGCCAAGTGCTTGTGATGCTGATTTGTATTAAAGATCAGGTTGTTCTTCACTACGAGGATGAT
GGAGTCGGTTTTGATGCAAGCCATCTTGATCAGCACACCATGAGCATGGGCCTCTCGGGAATCAGAGAACGAGTCAAGGC
GTTAAATGGGAAGCTTCACATTCACACAGCCCCAGAAAAAGGGCTGAAGGTGAAAATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.494