Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V9K84_RS02815 Genome accession   NZ_CP146966
Coordinates   593464..595686 (+) Length   740 a.a.
NCBI ID   WP_178075061.1    Uniprot ID   -
Organism   Pseudomonas sp. AE27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 588464..600686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9K84_RS02795 (V9K84_02795) - 590340..590963 (+) 624 WP_058541066.1 glutathione S-transferase -
  V9K84_RS02800 (V9K84_02800) - 591108..592040 (+) 933 WP_043862894.1 ABC transporter ATP-binding protein -
  V9K84_RS02805 (V9K84_02805) - 592037..592816 (+) 780 WP_058541067.1 ABC transporter permease -
  V9K84_RS02810 (V9K84_02810) - 592784..593323 (-) 540 WP_043862892.1 DUF2062 domain-containing protein -
  V9K84_RS02815 (V9K84_02815) comA 593464..595686 (+) 2223 WP_178075061.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9K84_RS02820 (V9K84_02820) exbB 595749..596384 (+) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9K84_RS02825 (V9K84_02825) - 596381..596812 (+) 432 WP_054915817.1 biopolymer transporter ExbD -
  V9K84_RS02830 (V9K84_02830) lpxK 596812..597822 (+) 1011 WP_088514319.1 tetraacyldisaccharide 4'-kinase -
  V9K84_RS02835 (V9K84_02835) - 597860..598045 (+) 186 WP_003247142.1 Trm112 family protein -
  V9K84_RS02840 (V9K84_02840) kdsB 598042..598806 (+) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9K84_RS02845 (V9K84_02845) - 598806..599270 (+) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  V9K84_RS02850 (V9K84_02850) murB 599267..600286 (+) 1020 WP_088514320.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79764.16 Da        Isoelectric Point: 10.6388

>NTDB_id=945137 V9K84_RS02815 WP_178075061.1 593464..595686(+) (comA) [Pseudomonas sp. AE27]
MRTRMLALALGLLALNVLPALPSVGWLWGIGMTGVLCLVCRWAVPGLFLLGFAWACCSAQWALDDRLRPELEGRTLWLEG
RVVGLAQQGAHSVRFELAEASSRRAQLPQRLSLSWFGGPSVNSGERWRLAVQLQRPSGLLNPHGPDQEAAMLARRIGATG
RVRAGERLAPASHAWRDSVRQRLLGAQAHGREGALAALVLGDGGALAQEDWQVLQATGTMHLLVISGQHIGLLAGLVYGL
VAGLARVGAWPRALPWLPWACGLAFAAALAYGLMAGFQVPVRRACIMLAVVLLWRLRFRHLGAWIPLLLALNGVLLVEPL
ASLQPGFWLSFAAVAVLVYVFGGRLGAWNPWLAWCRAQWLIAIGLLPVLLALGLPISLSAPLANMVAVPWVSIAVLPLAL
AGTLLQGLPLLGEALLWLAGGSLAALFWTLAQVAHWQPAWTPVALPIWAWLMVGGGAVLLLLPGGLPMRVLGWPLLLLAG
CAPRNEIAHGQLEVWQLDVGQGQAFVLRTRHHAMLYDAGPATRGSDLGERVVVPTLRKLGVRELDLALISHAHADHAGGA
LAVQRSVPLVRVVGGDPDELPGQLQAQACASGEQWQWDGVLFSLWRWQQAGDSNQRSCVLHVDAGGETLLLTGDIDAQAE
RAWLRESTAGPVDWLQAPHHGSRTSSSQAFLERTRPRGVLISRGRHNAFGHPHAQVMARYQALGITVHDSALHGAVRLVL
GSFGQAVGQRSQRRFWREPT

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=945137 V9K84_RS02815 WP_178075061.1 593464..595686(+) (comA) [Pseudomonas sp. AE27]
ATGCGCACAAGGATGTTGGCGCTGGCCTTGGGGCTGTTGGCGCTCAACGTGCTACCTGCCTTGCCGTCGGTCGGCTGGCT
CTGGGGCATCGGCATGACGGGCGTGTTATGCCTGGTGTGTCGATGGGCAGTGCCCGGTCTGTTCCTGCTTGGTTTTGCCT
GGGCCTGTTGCTCGGCGCAATGGGCGCTGGACGATCGACTGCGGCCCGAGCTGGAGGGGCGCACCCTGTGGCTGGAAGGT
CGGGTAGTGGGCCTGGCGCAGCAGGGCGCACATTCGGTGCGTTTCGAGCTGGCCGAAGCCTCCTCGCGCCGCGCCCAGTT
GCCGCAGCGGCTGAGCCTGAGCTGGTTTGGCGGGCCGTCGGTCAACAGTGGCGAGCGTTGGCGCCTGGCGGTACAGCTGC
AGCGCCCCTCCGGCCTGCTCAACCCCCATGGGCCTGACCAGGAAGCCGCCATGCTGGCCCGGCGAATCGGTGCCACCGGC
CGTGTAAGGGCAGGTGAACGACTGGCCCCGGCCAGCCATGCGTGGCGTGATTCGGTGCGCCAACGCCTGCTCGGGGCTCA
GGCCCATGGGCGCGAAGGTGCGCTGGCGGCGCTGGTGCTGGGTGACGGCGGGGCGCTGGCACAGGAGGACTGGCAGGTGC
TCCAGGCAACCGGCACGATGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCCGGTCTGGTGTACGGCCTG
GTGGCCGGGTTGGCACGTGTGGGGGCATGGCCCAGGGCGCTGCCCTGGCTACCCTGGGCGTGCGGCCTGGCGTTTGCGGC
GGCCCTGGCGTACGGCTTGATGGCGGGCTTTCAGGTACCGGTACGACGCGCCTGCATCATGCTGGCGGTGGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTTGGGGCCTGGATTCCCTTGCTGCTCGCCCTCAACGGTGTATTGCTGGTGGAGCCATTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTCGCGGCGGTGGCGGTGCTGGTGTATGTGTTCGGCGGCCGGCTGGGGGC
CTGGAACCCCTGGCTGGCATGGTGCCGGGCCCAATGGCTGATCGCGATCGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGATCAGTCTCTCGGCACCGCTGGCCAATATGGTTGCGGTGCCCTGGGTCAGTATCGCGGTGTTGCCCCTGGCGCTG
GCCGGCACACTGCTGCAGGGGCTCCCGTTGCTGGGGGAGGCCCTGTTGTGGCTGGCTGGAGGTTCGCTGGCAGCCTTGTT
CTGGACACTGGCACAGGTGGCGCATTGGCAACCGGCCTGGACACCGGTCGCCTTGCCGATATGGGCATGGTTGATGGTGG
GTGGTGGCGCGGTACTGCTGCTGTTGCCGGGCGGGCTGCCGATGCGGGTGCTGGGCTGGCCCTTGCTGCTGCTGGCCGGC
TGTGCGCCTCGCAACGAGATCGCCCATGGGCAACTGGAGGTGTGGCAGCTGGATGTCGGCCAGGGCCAGGCGTTTGTGCT
GCGTACCCGTCACCATGCAATGCTGTATGACGCAGGCCCGGCCACCCGTGGTAGCGACCTGGGGGAGCGGGTGGTCGTGC
CGACTCTGCGCAAGCTGGGGGTGCGCGAGCTGGACCTGGCGCTGATCAGCCATGCCCATGCCGACCATGCCGGCGGCGCC
CTGGCGGTGCAGCGCAGCGTGCCGCTGGTGCGTGTGGTGGGCGGCGACCCGGATGAGCTGCCCGGGCAACTGCAGGCCCA
GGCCTGCGCCAGTGGCGAGCAATGGCAGTGGGATGGCGTGCTCTTCAGCCTGTGGCGCTGGCAGCAGGCCGGCGACAGCA
ATCAGCGCTCCTGTGTGTTGCACGTGGATGCCGGCGGGGAAACCCTGCTGCTTACCGGTGACATCGATGCCCAGGCCGAG
CGCGCCTGGCTGCGCGAGTCGACAGCCGGCCCGGTCGACTGGTTGCAGGCGCCCCATCATGGCAGCCGCACCTCGTCGAG
CCAGGCCTTTCTCGAGCGAACCCGGCCACGGGGCGTGTTGATTTCGCGAGGGCGCCACAATGCATTCGGGCATCCGCACG
CACAGGTGATGGCGCGTTACCAGGCGCTGGGTATCACCGTGCACGACAGCGCCCTGCACGGGGCGGTGCGCCTGGTGCTG
GGCAGCTTTGGCCAGGCGGTCGGGCAACGCAGCCAGCGGCGCTTCTGGCGGGAGCCGACATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.162

0.581
  comA Ralstonia pseudosolanacearum GMI1000

34.184

100

0.362