Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V9K84_RS02820 Genome accession   NZ_CP146966
Coordinates   595749..596384 (+) Length   211 a.a.
NCBI ID   WP_162484877.1    Uniprot ID   -
Organism   Pseudomonas sp. AE27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590749..601384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9K84_RS02800 (V9K84_02800) - 591108..592040 (+) 933 WP_043862894.1 ABC transporter ATP-binding protein -
  V9K84_RS02805 (V9K84_02805) - 592037..592816 (+) 780 WP_058541067.1 ABC transporter permease -
  V9K84_RS02810 (V9K84_02810) - 592784..593323 (-) 540 WP_043862892.1 DUF2062 domain-containing protein -
  V9K84_RS02815 (V9K84_02815) comA 593464..595686 (+) 2223 WP_178075061.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9K84_RS02820 (V9K84_02820) exbB 595749..596384 (+) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9K84_RS02825 (V9K84_02825) - 596381..596812 (+) 432 WP_054915817.1 biopolymer transporter ExbD -
  V9K84_RS02830 (V9K84_02830) lpxK 596812..597822 (+) 1011 WP_088514319.1 tetraacyldisaccharide 4'-kinase -
  V9K84_RS02835 (V9K84_02835) - 597860..598045 (+) 186 WP_003247142.1 Trm112 family protein -
  V9K84_RS02840 (V9K84_02840) kdsB 598042..598806 (+) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9K84_RS02845 (V9K84_02845) - 598806..599270 (+) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  V9K84_RS02850 (V9K84_02850) murB 599267..600286 (+) 1020 WP_088514320.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.00 Da        Isoelectric Point: 7.3618

>NTDB_id=945138 V9K84_RS02820 WP_162484877.1 595749..596384(+) (exbB) [Pseudomonas sp. AE27]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLTSEKLKTLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=945138 V9K84_RS02820 WP_162484877.1 595749..596384(+) (exbB) [Pseudomonas sp. AE27]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTTGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTCACCAGCGAGAAGCTCAAGACCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTGGCCGCAGGCCTGGCCAAC
TCCCGCCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGTGTCATCCACGAGCTGGAGCGCTACAT
CAACGCACTGGGCACCATCGCGGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCCTCGGTATTGGCGGGGGGGATCTCCAAGGCGTTGATCACCACCGCA
GCCGGCCTGATGGTGGGTATCCCGGCAGTATTCTTCCATCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTCCAGGGGGACCGTGATGTCGACCTGAGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858