Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACFW98_RS01815 Genome accession   NZ_CP170719
Coordinates   383471..385519 (+) Length   682 a.a.
NCBI ID   WP_395096744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 378471..390519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS01785 (ACFW98_01785) spoVM 379115..379195 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  ACFW98_RS01790 (ACFW98_01790) rpmB 379273..379461 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  ACFW98_RS01795 (ACFW98_01795) - 379720..380082 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  ACFW98_RS01800 (ACFW98_01800) - 380098..381765 (+) 1668 WP_395096741.1 DAK2 domain-containing protein -
  ACFW98_RS01805 (ACFW98_01805) sdaAB 381908..382570 (+) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACFW98_RS01810 (ACFW98_01810) sdaAA 382591..383493 (+) 903 WP_395096743.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACFW98_RS01815 (ACFW98_01815) recG 383471..385519 (+) 2049 WP_395096744.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFW98_RS01820 (ACFW98_01820) fapR 385626..386192 (+) 567 WP_003154320.1 transcription factor FapR -
  ACFW98_RS01825 (ACFW98_01825) plsX 386206..387204 (+) 999 WP_007409758.1 phosphate acyltransferase PlsX -
  ACFW98_RS01830 (ACFW98_01830) fabD 387223..388176 (+) 954 WP_395096745.1 ACP S-malonyltransferase -
  ACFW98_RS01835 (ACFW98_01835) fabG 388169..388908 (+) 740 Protein_354 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACFW98_RS01840 (ACFW98_01840) acpP 388993..389226 (+) 234 WP_003154310.1 acyl carrier protein -
  ACFW98_RS01845 (ACFW98_01845) rncS 389365..390114 (+) 750 WP_007409760.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77881.14 Da        Isoelectric Point: 6.7929

>NTDB_id=945133 ACFW98_RS01815 WP_395096744.1 383471..385519(+) (recG) [Bacillus amyloliquefaciens strain JP5008]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLAAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSFVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYVICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=945133 ACFW98_RS01815 WP_395096744.1 383471..385519(+) (recG) [Bacillus amyloliquefaciens strain JP5008]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGATGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTGAGAATCCGCTACAAGCTGCCTGA
TTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTACG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCGCCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACAACCGCACAGACGCGCGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTTTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTCAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGACTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGCTTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATTCCGAGAACGCTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATGTTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGGTTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCAGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCAGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAGACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCTTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTGGAAGGGGAGAAATTAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(261-415)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

RecG wedge domain (RecG_wedge)

(11-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.443

100

0.894
  recG/mmsA Streptococcus pneumoniae R6

50.075

97.801

0.49
  recG/mmsA Streptococcus pneumoniae R36A

50.075

97.801

0.49
  recG Neisseria meningitidis strain C311

39.204

95.748

0.375