Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP   Type   Regulator
Locus tag   ACFW98_RS01765 Genome accession   NZ_CP170719
Coordinates   374815..376758 (+) Length   647 a.a.
NCBI ID   WP_225046200.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 369815..381758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS01740 (ACFW98_01740) def 370189..370671 (+) 483 WP_033574585.1 peptide deformylase -
  ACFW98_RS01745 (ACFW98_01745) fmt 370676..371629 (+) 954 WP_076424120.1 methionyl-tRNA formyltransferase -
  ACFW98_RS01750 (ACFW98_01750) rsmB 371616..372959 (+) 1344 WP_395096738.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACFW98_RS01755 (ACFW98_01755) rlmN 372963..374054 (+) 1092 WP_014417746.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ACFW98_RS01760 (ACFW98_01760) - 374060..374821 (+) 762 WP_007409750.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  ACFW98_RS01765 (ACFW98_01765) stkP 374815..376758 (+) 1944 WP_225046200.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  ACFW98_RS01770 (ACFW98_01770) rsgA 376773..377663 (+) 891 WP_033574582.1 ribosome small subunit-dependent GTPase A -
  ACFW98_RS01775 (ACFW98_01775) rpe 377665..378318 (+) 654 WP_062623349.1 ribulose-phosphate 3-epimerase -
  ACFW98_RS01780 (ACFW98_01780) - 378384..379028 (+) 645 WP_395096740.1 thiamine diphosphokinase -
  ACFW98_RS01785 (ACFW98_01785) spoVM 379115..379195 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  ACFW98_RS01790 (ACFW98_01790) rpmB 379273..379461 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  ACFW98_RS01795 (ACFW98_01795) - 379720..380082 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -

Sequence


Protein


Download         Length: 647 a.a.        Molecular weight: 71721.39 Da        Isoelectric Point: 5.1202

>NTDB_id=945132 ACFW98_RS01765 WP_225046200.1 374815..376758(+) (stkP) [Bacillus amyloliquefaciens strain JP5008]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYINAHGPLHPKEALSVMEQIVSAIAHAHQNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKIPFDGESAVSIALKHLQTETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAKAAPQAETPGETDDKEQQPA
KKKKRKWPWVLLAVCFIFIMAAVLAVTVFPSLFMPKDVSVPDVRGMKYEKAEALLEKNGLRADPDITDIEDEKIEEELMV
KTDPKAGSTVKEGSSVKLYKSIGKPKTQLIDVKGRQIGDAKKALKEKGFKHVNVKEENDDSEAGTVIDQNPSAGTDMVAS
DDEVNLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKQAHSDDVPKGQVMKQEPSAGTAVKPGSNVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGDELEVQIAIDDKDHSISDTYDSFKIKEPTEKIIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=945132 ACFW98_RS01765 WP_225046200.1 374815..376758(+) (stkP) [Bacillus amyloliquefaciens strain JP5008]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCAAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGATATTTATTACATTGTCATGGAATATGTGGAAGGCATGACATTAAAGGAATACATAAACGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCCGTTATGGAGCAGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGGG
ATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGTGACGGATTTCGGCATCGCCACAGCGCTTACG
TCTACGACAATCACACATACGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTGGC
AACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGTAAAATTCCTTTTGACGGAGAAT
CAGCCGTCAGCATAGCGCTAAAGCATCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTCGAAAACATTATTTTAAAGGCAACCGCTAAAGACCCGTTTCACCGCTATGAAAGCGCCGAGGACATGGAAGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTGCAGGATGATGAGGAAATGACAAAAGCCATTC
CCGTCATTACTGACGGCGCAAAAGCCGCGCCTCAGGCGGAAACGCCGGGGGAGACAGATGATAAGGAACAGCAGCCCGCC
AAAAAGAAAAAACGGAAATGGCCGTGGGTTTTGCTGGCCGTCTGTTTCATTTTCATTATGGCGGCTGTTCTTGCGGTCAC
CGTGTTTCCGTCTTTGTTTATGCCTAAAGATGTAAGCGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGGCTCCGGGCGGATCCTGATATAACGGATATTGAAGATGAAAAAATAGAAGAGGAATTAATGGTC
AAAACGGACCCAAAAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGAAAACCGAAAAC
CCAGCTGATCGACGTGAAAGGACGGCAGATCGGCGACGCAAAAAAAGCGCTGAAGGAAAAAGGCTTCAAACATGTCAATG
TCAAAGAAGAGAACGATGACAGTGAGGCCGGCACCGTAATTGATCAGAACCCGTCAGCCGGCACCGACATGGTCGCAAGC
GACGATGAAGTCAATCTAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACTTACAGCAAAGAAGC
GGCTTCAGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAACAAGCCCATTCAGATGACGTGCCAAAAGGACAAG
TCATGAAACAAGAGCCGTCAGCCGGCACTGCGGTTAAGCCGGGAAGTAATGTTGAAGTGACGTTCTCGCTCGGACCTGAA
GAAAAACCGGCGAAAACGGTAAAAGAAAAAATCAGCATTCCTTACGAACCCGAACATGAAGGGGACGAGCTTGAAGTGCA
AATCGCCATCGATGATAAGGACCACAGCATCTCTGATACGTATGACTCATTTAAAATAAAAGAGCCGACTGAAAAAATAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

39.274

93.663

0.368

  stkP Streptococcus pneumoniae D39

39.109

93.663

0.366

  stkP Streptococcus pneumoniae R6

39.109

93.663

0.366

  stkP Streptococcus pneumoniae Rx1

38.944

93.663

0.365