Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ACFXAA_RS11760 Genome accession   NZ_CP170717
Coordinates   2443346..2444542 (+) Length   398 a.a.
NCBI ID   WP_007614967.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2438346..2449542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS11740 (ACFXAA_11740) walK 2438441..2440276 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  ACFXAA_RS11745 (ACFXAA_11745) yycH 2440266..2441624 (+) 1359 WP_015418614.1 two-component system activity regulator YycH -
  ACFXAA_RS11750 (ACFXAA_11750) - 2441611..2442450 (+) 840 WP_040238684.1 two-component system regulatory protein YycI -
  ACFXAA_RS11755 (ACFXAA_11755) vicX 2442465..2443259 (+) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  ACFXAA_RS11760 (ACFXAA_11760) htrA 2443346..2444542 (+) 1197 WP_007614967.1 S1C family serine protease Regulator
  ACFXAA_RS11765 (ACFXAA_11765) - 2445051..2445260 (+) 210 WP_025285567.1 winged helix-turn-helix domain-containing protein -
  ACFXAA_RS11770 (ACFXAA_11770) - 2445257..2446675 (+) 1419 WP_395135255.1 sensor histidine kinase -
  ACFXAA_RS11775 (ACFXAA_11775) - 2446907..2447914 (+) 1008 WP_031379194.1 ThiF family adenylyltransferase -
  ACFXAA_RS11780 (ACFXAA_11780) - 2447911..2449233 (+) 1323 WP_047936353.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42633.44 Da        Isoelectric Point: 7.4580

>NTDB_id=945058 ACFXAA_RS11760 WP_007614967.1 2443346..2444542(+) (htrA) [Bacillus amyloliquefaciens strain JP5014]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLLPYWTGGDHGESSKSTSQRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGQPDWNAEVLQTDAAINPGN
SGGALMDISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGHKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTAEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=945058 ACFXAA_RS11760 WP_007614967.1 2443346..2444542(+) (htrA) [Bacillus amyloliquefaciens strain JP5014]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGAGGGTACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCTTTCCTGCTGCCGTACTGGACAGGCGGAGACCATGGAGAAAGCAGCA
AAAGCACCAGCCAGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCAGATTCGGTAGTCGGTGTTCTCAATATCCAAAAGACCGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGCTCACGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCCGTG
CTGAAGGTGAAGTCTGATAAAATCAAATCGGCCGCCCAGTTTGGCAATTCTGATCAGGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGGCTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGGGCGGTGC
CCGTTGACTCAAACGGCGACGGACAGCCGGATTGGAATGCGGAAGTGCTGCAGACCGATGCCGCGATTAACCCCGGCAAC
AGCGGCGGCGCTTTGATGGATATATCGGGCAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
CATCGGCCTGTCCATCCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCAGACGGCCTT
TCCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGCTACCATTGGAGCCAGACGCTGAAACTTCCGAAAGGCGTT
AAAACCGGGGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATTAC
CGGGTTCGACGGACATAAGGTCAATGACGTTGTTGATCTCCGTGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTAA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACAGCGGAAGTCAAACTGACAGAAGCGGATCGATTACAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.434

99.497

0.432

  htrA Streptococcus mitis NCTC 12261

41.451

96.985

0.402

  htrA Streptococcus gordonii str. Challis substr. CH1

40.665

98.241

0.399