Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACFXAA_RS03285 Genome accession   NZ_CP170717
Coordinates   740362..742410 (-) Length   682 a.a.
NCBI ID   WP_031378747.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 735362..747410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS03255 (ACFXAA_03255) rncS 735766..736515 (-) 750 WP_007409760.1 ribonuclease III -
  ACFXAA_RS03260 (ACFXAA_03260) acpP 736654..736887 (-) 234 WP_003154310.1 acyl carrier protein -
  ACFXAA_RS03265 (ACFXAA_03265) fabG 736972..737712 (-) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACFXAA_RS03270 (ACFXAA_03270) fabD 737705..738658 (-) 954 WP_395135644.1 ACP S-malonyltransferase -
  ACFXAA_RS03275 (ACFXAA_03275) plsX 738677..739675 (-) 999 WP_053573432.1 phosphate acyltransferase PlsX -
  ACFXAA_RS03280 (ACFXAA_03280) fapR 739689..740255 (-) 567 WP_003154320.1 transcription factor FapR -
  ACFXAA_RS03285 (ACFXAA_03285) recG 740362..742410 (-) 2049 WP_031378747.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFXAA_RS03290 (ACFXAA_03290) sdaAA 742388..743290 (-) 903 WP_012117539.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACFXAA_RS03295 (ACFXAA_03295) sdaAB 743311..743973 (-) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACFXAA_RS03300 (ACFXAA_03300) - 744116..745783 (-) 1668 WP_060675459.1 DAK2 domain-containing protein -
  ACFXAA_RS03305 (ACFXAA_03305) - 745799..746161 (-) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  ACFXAA_RS03310 (ACFXAA_03310) rpmB 746420..746608 (+) 189 WP_003154328.1 50S ribosomal protein L28 -
  ACFXAA_RS03315 (ACFXAA_03315) spoVM 746686..746766 (-) 81 WP_003154329.1 stage V sporulation protein SpoVM -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77891.17 Da        Isoelectric Point: 6.7929

>NTDB_id=944989 ACFXAA_RS03285 WP_031378747.1 740362..742410(-) (recG) [Bacillus amyloliquefaciens strain JP5014]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLTAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=944989 ACFXAA_RS03285 WP_031378747.1 740362..742410(-) (recG) [Bacillus amyloliquefaciens strain JP5014]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTGAGAATCCGCTACAAGCTTCCTGA
CTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGCGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTACG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCACCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACAACCGCACAGACGCGTGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTTTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTCAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGCCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATTCCGAGAACGCTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTAATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGGTTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCAGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCGGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCGTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTGGAAGGGGAGAAATTAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(261-415)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

RecG wedge domain (RecG_wedge)

(11-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.736

100

0.897
  recG/mmsA Streptococcus pneumoniae R6

50.225

97.801

0.491
  recG/mmsA Streptococcus pneumoniae R36A

50.225

97.801

0.491
  recG Neisseria meningitidis strain C311

39.663

95.748

0.38