Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ACFW99_RS19670 Genome accession   NZ_CP170651
Coordinates   3999595..4000791 (-) Length   398 a.a.
NCBI ID   WP_007614967.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3994595..4005791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS19650 (ACFW99_19650) - 3994904..3996226 (-) 1323 WP_047936353.1 ABC transporter substrate-binding protein -
  ACFW99_RS19655 (ACFW99_19655) - 3996223..3997230 (-) 1008 WP_031379194.1 ThiF family adenylyltransferase -
  ACFW99_RS19660 (ACFW99_19660) - 3997462..3998880 (-) 1419 WP_317859634.1 ATP-binding protein -
  ACFW99_RS19665 (ACFW99_19665) - 3998877..3999086 (-) 210 WP_025285567.1 winged helix-turn-helix domain-containing protein -
  ACFW99_RS19670 (ACFW99_19670) htrA 3999595..4000791 (-) 1197 WP_007614967.1 S1C family serine protease Regulator
  ACFW99_RS19675 (ACFW99_19675) vicX 4000878..4001672 (-) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  ACFW99_RS19680 (ACFW99_19680) - 4001687..4002526 (-) 840 WP_031379196.1 two-component system regulatory protein YycI -
  ACFW99_RS19685 (ACFW99_19685) yycH 4002513..4003871 (-) 1359 WP_317859635.1 two-component system activity regulator YycH -
  ACFW99_RS19690 (ACFW99_19690) walK 4003861..4005696 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42633.44 Da        Isoelectric Point: 7.4580

>NTDB_id=944813 ACFW99_RS19670 WP_007614967.1 3999595..4000791(-) (htrA) [Bacillus amyloliquefaciens strain JP5025]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLLPYWTGGDHGESSKSTSQRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGQPDWNAEVLQTDAAINPGN
SGGALMDISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGHKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTAEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=944813 ACFW99_RS19670 WP_007614967.1 3999595..4000791(-) (htrA) [Bacillus amyloliquefaciens strain JP5025]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGAGGGTACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCTTTCCTGCTGCCGTACTGGACAGGCGGAGACCATGGAGAAAGCAGCA
AAAGCACCAGCCAGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCAGATTCGGTAGTCGGTGTTCTCAATATCCAAAAGACCGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGCTCACGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCCGTG
CTGAAGGTGAAGTCTGATAAAATCAAATCGGCCGCCCAGTTTGGCAATTCTGATCAGGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGGCTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGGGCGGTGC
CCGTTGACTCAAACGGCGACGGACAGCCGGATTGGAATGCGGAAGTGCTGCAGACCGATGCCGCGATTAACCCCGGCAAC
AGCGGCGGCGCTTTGATGGATATATCGGGCAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
CATCGGCCTGTCCATCCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCAGACGGCCTT
TCCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGCTACCATTGGAGCCAGACGCTGAAACTTCCGAAAGGCGTT
AAAACCGGGGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATTAC
CGGGTTCGACGGACATAAGGTCAATGACGTTGTTGATCTCCGTGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTAA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACAGCGGAAGTCAAACTGACAGAAGCGGATCGATTACAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.434

99.497

0.432

  htrA Streptococcus mitis NCTC 12261

41.451

96.985

0.402

  htrA Streptococcus gordonii str. Challis substr. CH1

40.665

98.241

0.399