Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   ACFW99_RS08190 Genome accession   NZ_CP170651
Coordinates   1630682..1632730 (+) Length   682 a.a.
NCBI ID   WP_031378747.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1625682..1637730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS08160 (ACFW99_08160) spoVM 1626326..1626406 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  ACFW99_RS08165 (ACFW99_08165) rpmB 1626484..1626672 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  ACFW99_RS08170 (ACFW99_08170) - 1626931..1627293 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  ACFW99_RS08175 (ACFW99_08175) - 1627309..1628976 (+) 1668 WP_060675459.1 DAK2 domain-containing protein -
  ACFW99_RS08180 (ACFW99_08180) sdaAB 1629119..1629781 (+) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACFW99_RS08185 (ACFW99_08185) sdaAA 1629802..1630704 (+) 903 WP_012117539.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACFW99_RS08190 (ACFW99_08190) recG 1630682..1632730 (+) 2049 WP_031378747.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFW99_RS08195 (ACFW99_08195) fapR 1632837..1633403 (+) 567 WP_003154320.1 transcription factor FapR -
  ACFW99_RS08200 (ACFW99_08200) plsX 1633417..1634415 (+) 999 WP_053573432.1 phosphate acyltransferase PlsX -
  ACFW99_RS08205 (ACFW99_08205) fabD 1634434..1635387 (+) 954 WP_015417458.1 ACP S-malonyltransferase -
  ACFW99_RS08210 (ACFW99_08210) fabG 1635380..1636120 (+) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACFW99_RS08215 (ACFW99_08215) acpP 1636205..1636438 (+) 234 WP_003154310.1 acyl carrier protein -
  ACFW99_RS08220 (ACFW99_08220) rncS 1636577..1637326 (+) 750 WP_007409760.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 77891.17 Da        Isoelectric Point: 6.7929

>NTDB_id=944732 ACFW99_RS08190 WP_031378747.1 1630682..1632730(+) (recG) [Bacillus amyloliquefaciens strain JP5025]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLTAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=944732 ACFW99_RS08190 WP_031378747.1 1630682..1632730(+) (recG) [Bacillus amyloliquefaciens strain JP5025]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTGAGAATCCGCTACAAGCTTCCTGA
CTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGCGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTACG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCACCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACAACCGCACAGACGCGTGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTTTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTCAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGCCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACCCCGATTCCGAGAACGCTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTAATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGGTTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCAGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCGGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCGTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTGGAAGGGGAGAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.736

100

0.897

  recG/mmsA Streptococcus pneumoniae R6

50.225

97.801

0.491

  recG/mmsA Streptococcus pneumoniae R36A

50.225

97.801

0.491

  recG Neisseria meningitidis strain C311

39.663

95.748

0.38