Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V9W58_RS18560 Genome accession   NZ_CP146764
Coordinates   3697096..3697785 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain AP202     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692096..3702785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W58_RS18525 (V9W58_18525) - 3692293..3692775 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V9W58_RS18530 (V9W58_18530) flgM 3692790..3693056 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V9W58_RS18535 (V9W58_18535) - 3693126..3693545 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  V9W58_RS18540 (V9W58_18540) comFC 3693619..3694308 (-) 690 WP_201756968.1 phosphoribosyltransferase family protein Machinery gene
  V9W58_RS18545 (V9W58_18545) - 3694314..3694598 (-) 285 WP_007407481.1 competence protein ComFB -
  V9W58_RS18550 (V9W58_18550) comFA 3694656..3696041 (-) 1386 WP_251248169.1 DEAD/DEAH box helicase Machinery gene
  V9W58_RS18555 (V9W58_18555) - 3696150..3696998 (-) 849 WP_136396659.1 DegV family protein -
  V9W58_RS18560 (V9W58_18560) degU 3697096..3697785 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V9W58_RS18565 (V9W58_18565) degS 3697862..3699025 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  V9W58_RS18570 (V9W58_18570) - 3699248..3699895 (+) 648 WP_061581228.1 YigZ family protein -
  V9W58_RS18575 (V9W58_18575) - 3699900..3701120 (+) 1221 WP_061581227.1 LCP family protein -
  V9W58_RS18580 (V9W58_18580) - 3701219..3702295 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=944611 V9W58_RS18560 WP_003219701.1 3697096..3697785(-) (degU) [Bacillus velezensis strain AP202]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=944611 V9W58_RS18560 WP_003219701.1 3697096..3697785(-) (degU) [Bacillus velezensis strain AP202]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1