Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   V9W58_RS18540 Genome accession   NZ_CP146764
Coordinates   3693619..3694308 (-) Length   229 a.a.
NCBI ID   WP_201756968.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP202     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3688619..3699308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W58_RS18505 (V9W58_18505) fliW 3688710..3689141 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  V9W58_RS18510 (V9W58_18510) - 3689171..3689740 (-) 570 WP_038460037.1 DUF6470 family protein -
  V9W58_RS18515 (V9W58_18515) flgL 3689831..3690748 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  V9W58_RS18520 (V9W58_18520) flgK 3690760..3692277 (-) 1518 WP_251248170.1 flagellar hook-associated protein FlgK -
  V9W58_RS18525 (V9W58_18525) - 3692293..3692775 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V9W58_RS18530 (V9W58_18530) flgM 3692790..3693056 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V9W58_RS18535 (V9W58_18535) - 3693126..3693545 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  V9W58_RS18540 (V9W58_18540) comFC 3693619..3694308 (-) 690 WP_201756968.1 phosphoribosyltransferase family protein Machinery gene
  V9W58_RS18545 (V9W58_18545) - 3694314..3694598 (-) 285 WP_007407481.1 competence protein ComFB -
  V9W58_RS18550 (V9W58_18550) comFA 3694656..3696041 (-) 1386 WP_251248169.1 DEAD/DEAH box helicase Machinery gene
  V9W58_RS18555 (V9W58_18555) - 3696150..3696998 (-) 849 WP_136396659.1 DegV family protein -
  V9W58_RS18560 (V9W58_18560) degU 3697096..3697785 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V9W58_RS18565 (V9W58_18565) degS 3697862..3699025 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25247.91 Da        Isoelectric Point: 8.2921

>NTDB_id=944609 V9W58_RS18540 WP_201756968.1 3693619..3694308(-) (comFC) [Bacillus velezensis strain AP202]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=944609 V9W58_RS18540 WP_201756968.1 3693619..3694308(-) (comFC) [Bacillus velezensis strain AP202]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594