Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V9W58_RS16520 Genome accession   NZ_CP146764
Coordinates   3269678..3270322 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain AP202     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3264678..3275322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W58_RS16485 (V9W58_16485) - 3265863..3266294 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  V9W58_RS16490 (V9W58_16490) - 3266294..3266635 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  V9W58_RS16495 (V9W58_16495) - 3266628..3268109 (+) 1482 WP_251248225.1 Na+/H+ antiporter subunit D -
  V9W58_RS16500 (V9W58_16500) - 3268115..3268591 (+) 477 WP_251248224.1 Na+/H+ antiporter subunit E -
  V9W58_RS16505 (V9W58_16505) - 3268591..3268875 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  V9W58_RS16510 (V9W58_16510) mnhG 3268859..3269233 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  V9W58_RS16515 (V9W58_16515) - 3269273..3269656 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  V9W58_RS16520 (V9W58_16520) comA 3269678..3270322 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  V9W58_RS16525 (V9W58_16525) comP 3270403..3272703 (-) 2301 WP_174737231.1 histidine kinase Regulator
  V9W58_RS16530 (V9W58_16530) comX 3272717..3272890 (-) 174 WP_012118314.1 competence pheromone ComX -
  V9W58_RS16535 (V9W58_16535) - 3272859..3273719 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  V9W58_RS16540 (V9W58_16540) degQ 3273927..3274067 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  V9W58_RS16545 (V9W58_16545) - 3274533..3274874 (+) 342 WP_072589519.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=944604 V9W58_RS16520 WP_003152052.1 3269678..3270322(-) (comA) [Bacillus velezensis strain AP202]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=944604 V9W58_RS16520 WP_003152052.1 3269678..3270322(-) (comA) [Bacillus velezensis strain AP202]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864