Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V9W62_RS17180 Genome accession   NZ_CP146763
Coordinates   3525241..3526626 (-) Length   461 a.a.
NCBI ID   WP_043020592.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP81     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3520241..3531626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS17145 (V9W62_17145) flgL 3520416..3521333 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  V9W62_RS17150 (V9W62_17150) flgK 3521345..3522862 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  V9W62_RS17155 (V9W62_17155) - 3522878..3523360 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V9W62_RS17160 (V9W62_17160) flgM 3523375..3523641 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V9W62_RS17165 (V9W62_17165) - 3523711..3524130 (-) 420 WP_043020594.1 TIGR03826 family flagellar region protein -
  V9W62_RS17170 (V9W62_17170) comFC 3524204..3524893 (-) 690 WP_235611321.1 phosphoribosyltransferase family protein Machinery gene
  V9W62_RS17175 (V9W62_17175) - 3524899..3525183 (-) 285 WP_007407481.1 competence protein ComFB -
  V9W62_RS17180 (V9W62_17180) comFA 3525241..3526626 (-) 1386 WP_043020592.1 DEAD/DEAH box helicase Machinery gene
  V9W62_RS17185 (V9W62_17185) - 3526735..3527583 (-) 849 WP_003151387.1 DegV family protein -
  V9W62_RS17190 (V9W62_17190) degU 3527681..3528370 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V9W62_RS17195 (V9W62_17195) degS 3528447..3529610 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  V9W62_RS17200 (V9W62_17200) - 3529833..3530480 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52662.99 Da        Isoelectric Point: 10.2276

>NTDB_id=944533 V9W62_RS17180 WP_043020592.1 3525241..3526626(-) (comFA) [Bacillus velezensis strain AP81]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=944533 V9W62_RS17180 WP_043020592.1 3525241..3526626(-) (comFA) [Bacillus velezensis strain AP81]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTACTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623