Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   V9W62_RS17170 Genome accession   NZ_CP146763
Coordinates   3524204..3524893 (-) Length   229 a.a.
NCBI ID   WP_235611321.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP81     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519204..3529893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS17135 (V9W62_17135) fliW 3519295..3519726 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  V9W62_RS17140 (V9W62_17140) - 3519756..3520325 (-) 570 WP_043020595.1 DUF6470 family protein -
  V9W62_RS17145 (V9W62_17145) flgL 3520416..3521333 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  V9W62_RS17150 (V9W62_17150) flgK 3521345..3522862 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  V9W62_RS17155 (V9W62_17155) - 3522878..3523360 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V9W62_RS17160 (V9W62_17160) flgM 3523375..3523641 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V9W62_RS17165 (V9W62_17165) - 3523711..3524130 (-) 420 WP_043020594.1 TIGR03826 family flagellar region protein -
  V9W62_RS17170 (V9W62_17170) comFC 3524204..3524893 (-) 690 WP_235611321.1 phosphoribosyltransferase family protein Machinery gene
  V9W62_RS17175 (V9W62_17175) - 3524899..3525183 (-) 285 WP_007407481.1 competence protein ComFB -
  V9W62_RS17180 (V9W62_17180) comFA 3525241..3526626 (-) 1386 WP_043020592.1 DEAD/DEAH box helicase Machinery gene
  V9W62_RS17185 (V9W62_17185) - 3526735..3527583 (-) 849 WP_003151387.1 DegV family protein -
  V9W62_RS17190 (V9W62_17190) degU 3527681..3528370 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V9W62_RS17195 (V9W62_17195) degS 3528447..3529610 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25281.90 Da        Isoelectric Point: 8.0779

>NTDB_id=944532 V9W62_RS17170 WP_235611321.1 3524204..3524893(-) (comFC) [Bacillus velezensis strain AP81]
MNCLLCDSPISSSLTWRSLFSLAPEQEMCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=944532 V9W62_RS17170 WP_235611321.1 3524204..3524893(-) (comFC) [Bacillus velezensis strain AP81]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCACCCGAGCAAGA
GATGTGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594