Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACFKQE_RS03000 Genome accession   NZ_CP170447
Coordinates   615495..617585 (-) Length   696 a.a.
NCBI ID   WP_154468771.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain PAT3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 610495..622585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKQE_RS02960 (ACFKQE_02960) - 611317..611964 (-) 648 WP_154468767.1 OmpA family protein -
  ACFKQE_RS02965 (ACFKQE_02965) - 612031..613182 (-) 1152 WP_154468768.1 class I SAM-dependent methyltransferase -
  ACFKQE_RS02985 (ACFKQE_02985) - 613724..614251 (+) 528 WP_154468769.1 shikimate kinase -
  ACFKQE_RS02990 (ACFKQE_02990) - 614223..614657 (-) 435 WP_004920171.1 RNA-binding S4 domain-containing protein -
  ACFKQE_RS02995 (ACFKQE_02995) - 614738..615457 (+) 720 WP_154468770.1 hypothetical protein -
  ACFKQE_RS03000 (ACFKQE_03000) recG 615495..617585 (-) 2091 WP_154468771.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFKQE_RS03005 (ACFKQE_03005) - 617703..618644 (+) 942 WP_154468772.1 sulfate/molybdate ABC transporter ATP-binding protein -
  ACFKQE_RS03010 (ACFKQE_03010) - 618688..619029 (-) 342 WP_161398972.1 zinc ribbon domain-containing protein YjdM -
  ACFKQE_RS03015 (ACFKQE_03015) - 619157..620428 (-) 1272 WP_014938427.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  ACFKQE_RS03020 (ACFKQE_03020) - 620571..622061 (-) 1491 WP_161398974.1 M1 family aminopeptidase -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 79678.38 Da        Isoelectric Point: 9.6590

>NTDB_id=944464 ACFKQE_RS03000 WP_154468771.1 615495..617585(-) (recG) [Riemerella anatipestifer strain PAT3]
MTLETSIEYLKGVGPERAKLIKNLLGISTVEDLLTFYPIRYLDKSRLYRVADLQKNADVEVQLKGKIRELQEVVYGKGQK
RLSAKFYDETGVIELVWFRYTKWMVEQMPINKEVFIFGKVNWFNGVFSMPHPEIELDEKKALSETLLPIYSGSEKLIKRG
VNNKFFQTIIREVIKQTSFFLEENLPSNILSSLKLIGRREAYQNIHFPQNINWIDEANKRLKFEEAFFFQLGYGLKKQYQ
KVSNVGIPFPLVGDYFNNFYQNKLPFELTNAQKRVLKEIRNDMKKPIQMNRLLQGDVGSGKTMVALLSMLLALDNGTQAC
LMAPTEILAQQHYNSIAQLLEGTNIEVRLLTGSTKKSERKEIHEGLESGRLSILVGTHAILEDAVKFKNLGLGIIDEQHR
FGVAQRAKLWSKNKIPPHILIMTATPIPRTLAMSFYSDLDVSVIDELPTGRKPIITAHRREKDRLSVYQFAKEEIQKGRQ
IYFVYPLIEESETLDYKNLMEGFEIVLDYFKDYEVTMLHGKMKPHEKDEAMNYFASGKAQIMVATTVIEVGVNVPNASVM
VIESAERFGLSQLHQLRGRVGRGAEQSYCILMTSDKLSTEGRKRIKTMCETNDGFKISEVDMQLRGPGDILGTQQSGIVD
FKKLDLTKDASVIKVAQKIVTLLVQSDPNLTHPAHTQLRNYYIKQYKGKNKWGKIS

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=944464 ACFKQE_RS03000 WP_154468771.1 615495..617585(-) (recG) [Riemerella anatipestifer strain PAT3]
TTGACTTTAGAAACTTCCATAGAATACCTTAAAGGAGTAGGTCCAGAGCGGGCAAAACTCATCAAAAATCTGCTGGGAAT
AAGTACAGTGGAAGACTTGCTTACATTCTATCCAATAAGATATTTAGATAAAAGCCGATTGTATAGAGTAGCAGATTTGC
AGAAAAATGCAGATGTAGAGGTGCAATTAAAGGGTAAGATAAGAGAATTGCAGGAGGTGGTTTATGGTAAGGGACAAAAG
CGATTGTCTGCAAAATTCTACGATGAAACAGGCGTGATAGAACTGGTTTGGTTTAGATATACCAAATGGATGGTGGAACA
GATGCCTATCAATAAAGAAGTATTTATTTTTGGTAAGGTCAATTGGTTTAATGGAGTTTTTTCTATGCCTCATCCAGAGA
TAGAGCTGGACGAGAAAAAAGCCTTGTCAGAAACTTTATTACCCATCTATTCAGGGAGTGAAAAGCTCATTAAAAGAGGG
GTTAATAATAAATTTTTCCAAACCATTATTAGGGAAGTTATTAAACAGACTTCTTTCTTTTTAGAAGAAAATTTACCGAG
TAATATTCTTAGTTCGCTTAAACTGATTGGTAGAAGAGAGGCTTACCAAAATATCCATTTTCCTCAAAATATAAACTGGA
TAGATGAGGCTAATAAACGATTGAAATTTGAGGAAGCTTTTTTCTTTCAGCTAGGGTATGGTCTTAAAAAACAATATCAA
AAAGTATCCAATGTAGGAATTCCCTTTCCGTTAGTGGGAGATTATTTTAATAATTTTTATCAAAATAAATTACCTTTTGA
ACTCACTAACGCCCAAAAGCGAGTTCTGAAAGAGATTAGGAATGATATGAAAAAGCCTATCCAAATGAACAGGCTTTTGC
AGGGCGATGTAGGTTCGGGTAAAACTATGGTGGCGTTGCTTTCAATGCTATTGGCGTTGGATAATGGGACACAGGCGTGC
CTTATGGCTCCTACGGAAATTTTGGCTCAACAACATTATAACAGCATCGCTCAACTTTTAGAAGGAACGAACATTGAAGT
AAGGCTCTTAACAGGTTCTACAAAAAAATCGGAACGGAAAGAAATTCACGAAGGGTTGGAATCTGGGAGATTGTCTATCT
TGGTAGGAACTCACGCCATATTAGAAGATGCGGTTAAGTTTAAAAATTTGGGCTTGGGCATTATAGACGAGCAACATCGT
TTTGGGGTGGCACAAAGAGCGAAACTTTGGTCTAAAAATAAAATTCCACCGCATATTTTAATTATGACGGCAACGCCTAT
TCCTAGAACTTTAGCAATGAGTTTTTATTCGGATTTAGATGTTTCGGTAATAGATGAGTTGCCGACGGGGAGAAAGCCTA
TCATTACAGCTCATAGGAGAGAAAAAGACAGACTTTCGGTTTACCAGTTTGCAAAGGAAGAAATTCAAAAGGGAAGGCAA
ATTTATTTTGTGTATCCACTAATAGAAGAGTCAGAAACTTTAGACTATAAAAACTTGATGGAAGGCTTTGAAATAGTACT
AGACTATTTTAAGGATTACGAAGTTACGATGCTACATGGCAAAATGAAACCTCACGAAAAAGATGAAGCAATGAATTATT
TTGCTTCAGGTAAGGCTCAAATTATGGTAGCTACTACGGTTATAGAAGTGGGGGTAAATGTACCCAATGCTTCGGTAATG
GTAATAGAAAGTGCCGAAAGGTTTGGACTTTCACAGTTGCACCAACTTAGAGGTAGAGTGGGACGAGGGGCAGAGCAGAG
CTATTGTATTTTGATGACCTCGGATAAACTATCTACGGAAGGACGGAAACGAATTAAAACGATGTGCGAAACCAATGATG
GATTTAAAATCTCGGAGGTAGATATGCAACTTAGAGGTCCTGGGGATATATTGGGAACTCAGCAAAGTGGTATTGTAGAT
TTTAAAAAGTTGGATTTAACTAAAGATGCTTCGGTAATTAAGGTAGCACAGAAGATAGTAACCTTATTGGTTCAAAGCGA
CCCTAATTTGACTCACCCTGCACATACCCAATTAAGAAATTACTACATAAAGCAATATAAAGGTAAAAACAAATGGGGAA
AAATCAGTTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(270-429)

RecG wedge domain (RecG_wedge)

(7-174)

Helicase conserved C-terminal domain (Helicase_C)

(473-583)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(611-696)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

41.739

99.138

0.414
  recG/mmsA Streptococcus pneumoniae R6

40.584

98.42

0.399
  recG/mmsA Streptococcus pneumoniae R36A

40.584

98.42

0.399
  recG Neisseria meningitidis strain C311

41.4

94.397

0.391