Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   V9W59_RS14955 Genome accession   NZ_CP146762
Coordinates   2928053..2928193 (-) Length   46 a.a.
NCBI ID   WP_003213123.1    Uniprot ID   A0A5K1N966
Organism   Bacillus safensis strain JJ1041     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2923053..2933193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS14930 (V9W59_14930) - 2923318..2923707 (-) 390 WP_335343511.1 hotdog fold thioesterase -
  V9W59_RS14935 (V9W59_14935) comA 2923731..2924372 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  V9W59_RS14940 (V9W59_14940) comP 2924453..2926765 (-) 2313 WP_326161037.1 ATP-binding protein Regulator
  V9W59_RS14945 (V9W59_14945) comX 2926823..2926990 (-) 168 WP_080696376.1 competence pheromone ComX -
  V9W59_RS14950 (V9W59_14950) - 2926987..2927901 (-) 915 WP_135032741.1 polyprenyl synthetase family protein -
  V9W59_RS14955 (V9W59_14955) degQ 2928053..2928193 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  V9W59_RS14960 (V9W59_14960) - 2928699..2929055 (+) 357 WP_052503035.1 hypothetical protein -
  V9W59_RS14965 (V9W59_14965) - 2929091..2930317 (-) 1227 WP_024423326.1 HDOD domain-containing protein -
  V9W59_RS14970 (V9W59_14970) - 2930455..2931927 (-) 1473 WP_326161038.1 nicotinate phosphoribosyltransferase -
  V9W59_RS14975 (V9W59_14975) - 2931945..2932496 (-) 552 WP_024425949.1 isochorismatase family cysteine hydrolase -
  V9W59_RS14980 (V9W59_14980) - 2932557..2932964 (-) 408 WP_024423329.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5677.42 Da        Isoelectric Point: 4.6828

>NTDB_id=944457 V9W59_RS14955 WP_003213123.1 2928053..2928193(-) (degQ) [Bacillus safensis strain JJ1041]
MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEYVKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=944457 V9W59_RS14955 WP_003213123.1 2928053..2928193(-) (degQ) [Bacillus safensis strain JJ1041]
ATGGAAAAGTATGAAATCGAAGAACTTAAACAATTATTATGGAAACTTGAAAACGAAATCAGAGAAACAACGGCTTCTCT
TCATAACATTAACAAAAGCATTGATCAATACGACAAATATGAATATGTGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N966

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.696