Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V9W59_RS14935 Genome accession   NZ_CP146762
Coordinates   2923731..2924372 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain JJ1041     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2918731..2929372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS14900 (V9W59_14900) - 2919857..2920288 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  V9W59_RS14905 (V9W59_14905) - 2920288..2920629 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  V9W59_RS14910 (V9W59_14910) - 2920622..2922100 (+) 1479 WP_024423317.1 Na+/H+ antiporter subunit D -
  V9W59_RS14915 (V9W59_14915) - 2922107..2922586 (+) 480 WP_024423318.1 Na+/H+ antiporter subunit E -
  V9W59_RS14920 (V9W59_14920) - 2922586..2922867 (+) 282 WP_024423319.1 Na(+)/H(+) antiporter subunit F1 -
  V9W59_RS14925 (V9W59_14925) mnhG 2922851..2923225 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  V9W59_RS14930 (V9W59_14930) - 2923318..2923707 (-) 390 WP_335343511.1 hotdog fold thioesterase -
  V9W59_RS14935 (V9W59_14935) comA 2923731..2924372 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  V9W59_RS14940 (V9W59_14940) comP 2924453..2926765 (-) 2313 WP_326161037.1 ATP-binding protein Regulator
  V9W59_RS14945 (V9W59_14945) comX 2926823..2926990 (-) 168 WP_080696376.1 competence pheromone ComX -
  V9W59_RS14950 (V9W59_14950) - 2926987..2927901 (-) 915 WP_135032741.1 polyprenyl synthetase family protein -
  V9W59_RS14955 (V9W59_14955) degQ 2928053..2928193 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  V9W59_RS14960 (V9W59_14960) - 2928699..2929055 (+) 357 WP_052503035.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=944455 V9W59_RS14935 WP_024423322.1 2923731..2924372(-) (comA) [Bacillus safensis strain JJ1041]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=944455 V9W59_RS14935 WP_024423322.1 2923731..2924372(-) (comA) [Bacillus safensis strain JJ1041]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCAGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATT
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAAATAGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723