Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   V9W59_RS11690 Genome accession   NZ_CP146762
Coordinates   2323005..2323298 (-) Length   97 a.a.
NCBI ID   WP_024422977.1    Uniprot ID   A0A0M2EIN6
Organism   Bacillus safensis strain JJ1041     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2318005..2328298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS11640 (V9W59_11640) sinR 2318172..2318507 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  V9W59_RS11645 (V9W59_11645) - 2318575..2319375 (-) 801 WP_024422970.1 TasA family protein -
  V9W59_RS11650 (V9W59_11650) - 2319430..2320002 (-) 573 WP_024422971.1 signal peptidase I -
  V9W59_RS11655 (V9W59_11655) tapA 2320055..2320582 (-) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  V9W59_RS11660 (V9W59_11660) - 2320882..2321160 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  V9W59_RS11665 (V9W59_11665) - 2321195..2321389 (-) 195 WP_149126478.1 YqzE family protein -
  V9W59_RS11670 (V9W59_11670) comGG 2321449..2321832 (-) 384 WP_073206276.1 competence type IV pilus minor pilin ComGG -
  V9W59_RS11675 (V9W59_11675) comGF 2321829..2322356 (-) 528 WP_335343444.1 competence type IV pilus minor pilin ComGF -
  V9W59_RS11680 (V9W59_11680) comGE 2322268..2322582 (-) 315 WP_149126477.1 competence type IV pilus minor pilin ComGE -
  V9W59_RS11685 (V9W59_11685) comGD 2322566..2323012 (-) 447 WP_149126476.1 competence type IV pilus minor pilin ComGD -
  V9W59_RS11690 (V9W59_11690) comGC 2323005..2323298 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  V9W59_RS11695 (V9W59_11695) comGB 2323315..2324355 (-) 1041 WP_103131948.1 competence type IV pilus assembly protein ComGB -
  V9W59_RS11700 (V9W59_11700) comGA 2324336..2325406 (-) 1071 WP_025092972.1 competence type IV pilus ATPase ComGA Machinery gene
  V9W59_RS11705 (V9W59_11705) - 2325587..2326462 (-) 876 WP_024422979.1 STAS domain-containing protein -
  V9W59_RS11715 (V9W59_11715) - 2326686..2327066 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V9W59_RS11720 (V9W59_11720) - 2327280..2327522 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  V9W59_RS11725 (V9W59_11725) - 2327570..2328208 (-) 639 WP_024422981.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.62 Da        Isoelectric Point: 7.3218

>NTDB_id=944444 V9W59_RS11690 WP_024422977.1 2323005..2323298(-) (comGC) [Bacillus safensis strain JJ1041]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=944444 V9W59_RS11690 WP_024422977.1 2323005..2323298(-) (comGC) [Bacillus safensis strain JJ1041]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATAGTTATGCTCGTAATATCCATTCTTTTACTCATTACCATACC
GAATATCACACGTCATCACCAAGCGATTCAGGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTCAGCACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGGTTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392